Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0832 ATGGCGCCCGGAAGGAAGAAGCGGCAAGGGAACACATCCATTATTCCTGTGGATGCAAACCCCACTCAGCAAAAAGCACAATCTTTGGATATTGATGCTGAGTGTGAGAGTGAGACCAAAAGAATGAAATTTGCTGAGGAAAATGGTGATGGGGCAGGGGGTTCTTCTTCTGTTGTGAAAAAGAAGCGTGGCAGAAAAAGTAAAAAGGAGAAGCAGGACACGGAAAAGATGTTAGAGAGCAATTTGTCGGAGAAGAAAGATACTCAAGGCGAATACCACGGTGAAAATTGTGGAGTAGGAGGGTGTTCTTCTGTTCAAGAAAGTGCGAAAAAGAAACGTGGAAGAAAGAGTAAAAAGGAGAAGGAGGACATGGAAAAGAAGAAGATGGTAGAGGAGAAAGATGCTCAAAACGAAAACCATGGTGAAAATGGTGGAGTAGGAGGTTCTTCTTGTGTTGTAGATAGTGTGCCAAAGAAGCGTGGCAGAAAAAGTAAGAAGGAGAAGGAAGACGTGGAAAAGAAGATGTTAGAGGAGAAAGATGCTCAAAACGAAAACCATGGTGAAAATGGTGGAGTAGGAGGTTCTTCTTCTGTTGTAGAAGCTGTGGTAAAGAAGCGAGGTAGAAAGAGTAAAAAGGAGAAGGAAGACATGGAAAAGAAGATGTTAGAGGAGAAAGATGCTCAAAACGAAAACCATGGTGAAAATGGTGGAGTAGGAGGTTCTTCTTCTGTTGTAGATGGTGTGCCAAAGAAGCGTGGCAGAAAAAGTAAGAAGGAGAAGGAAGACATGGAAAAAAAGATGTTAGAGGGAAATTTGCTGGAGAAGAAAGATGTTCAAGACGTTAACCATGCCGAAAATGGTGGGGTACCTGATATGAGGCGTGGAAGTAAAAGAAAGATGCTTAAGGAAGATGATGGTGAGTTTGAAATGCCTGTGGATTCTTCAGGAAGTAGCATTCAGAAACAATATAGTCTTAGGGCCCCTAGAGTCAATATAGAAGAGGCAATGCCAAAAATCAACAAGAGAGATCCTAAGCAGTGGATTGAAGAGGAGTCCTTAATGTGTCATCAATGTCAGAGAAATGATAAAGGCAGGGTTGTGAGGTGCACACGTTGTAAGAGGAAAAGATTTTGTGTACTCTGTATAGAAAATTGGTATCCTCATTTGAAAGAGGATTATATTGCTGAGGCATGCCCTGTGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGAGATCCAATCAACTTATTAAAAAAATGAAGAAAAAAGAAGAAACCAATGAAAATGAGAAGATTGAACTCTCTATGCATTTGTTGCAAGTACTTCTTCCGTATTTAAGGCTGTTGGATGAAGAACAGATGATTGAGAATGAGACAGAAGCCAAGATACGGGGGCTCTCAGTCTCAGAGCTAAATGTAGCACAGGCAAATTTTGATAAAGATGAGCGTGTGTACTGTGACAACTGCAAAACGTCAATATTTGATTACCACAGAAGCTGTACAAAATGCTCTTTCGACCTTTGTCTCATCTGTTGTCGCGAGCTTCGAACTGGCCAGCTTGTAGGTGGTGCAGATCCAATTATGTTGGAGTTTGTCTGTCAAGGTCGTGATTACCTGCATGGTGAGGAAAATATAAGTGTAAAACAAAATGAACCAAATGCTGTTGAACAAAATGAACCAAATGCTGTTGAACGAAATGAACCAAATGCTGTTGCTGAGACTGTAGTTCGTGAGTGGTCAAGATCTGGGTGGCATGCAGAAAGTAATGGTAGCATTCCTTGTCCAAAAGTCAATGATGAATGTAACCATGGTTTTCTTGAACTGAGAAGCATATTAGGTCAACATTTTATCACTGATTTAGTGCATAAAGCAAACGAACTAGCACAAGCATACAAGCTTCAAGATGTAGTTAAGACCCCTGACAACTTCTGTTCGTGTTTGAGGCTTGATAGAAACACAGATGTTAGATATAATAATATGAGGAAGGTTGCTTCTCGTGCAGATTCCAGGGACAACTATTTATACTGTCCTAGGGCTGTAGATCTACAGGATGAGGATTTAAGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATTGTCAGCAACGTGCTTGCAAAAACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATGACTAAGACCAAGCATGAACAACATTTGGATGTGAAGGCAATTGATTGCTTAGATTGGTGCGAGGGAGAAATTAATATCCACCAATTCTTTACTGGGTATACAAAAGTTCGTGAGGATTGGCATAGTTGGCCTCAAATATTGAAATTAAAAGATTGGCCTCCTTCTAATTTATTTGAGGAACGCTTGCCTCGACATTGTGCAGAGTTCATATCTTCCTTGCCCTTCAAGGAATATACTGATCCTCTCAAAGGTTCTCTTAACTTAGCTGTGAAGTTGCCAACAGATTGTCTAAAACCAGACATGGGGCCAAAGACGTATATTGCTTACGGATTTCATCAGGAGCTCGGGCGTGGTGATTCAGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAATTGGAACCAAAGCATCTCATTGCCATTGAGAAGTTGAAACAAAAGCACTTTGAACAAGACAAAAGGGAGCTACTTGGTGATGATCAAAATAGAGAAACTAGTGTTGACATGCTTAATAATTTGTCTTCTACTATAAATGCTTTGGACAAGCAAAATAGTGTCCAAGTCATGGAACACAAAGGCAAATTATATGATAGGAAAGAAGTTGATCAGTTCCATCAACCCTCTGGTGGTAATGAGATTGCCATTGCTAATGAGGATGGTCTTTCATGTGAATCAGAGCATAAAGAGGTTGACAAAGTAAAAATAAAGCAAGAAAGTGATATGTTGTCTGGGGGGGATGGTTCAGAAGGTGCTCTCTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAATATCAGAGGAAGCATTTCAGAGAGTTCAGGCATCTCCATTGCTGTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACCTTCTATCTGACTGTGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAGAAGGTAGGAGATGCTGTTTTTGTTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAGGTTGCATTGGATTTTGTCTCTCCGGAAAATGTTGGGGAGTGCTTTCGTTTGACAGAGGAATTTCGCACACTTCCAATAAACCACATGTCTTGTGAGGACAAATTGGAGGTGAAGAAGATGACAATATATGCTATGCAAGACGTGATTGAAAAATTGGAGGAAGCAAGGTCCGGGAAAACCAAGGTTTCAGAGTAA 3429 0.4124 MAPGRKKRQGNTSIIPVDANPTQQKAQSLDIDAECESETKRMKFAEENGDGAGGSSSVVKKKRGRKSKKEKQDTEKMLESNLSEKKDTQGEYHGENCGVGGCSSVQESAKKKRGRKSKKEKEDMEKKKMVEEKDAQNENHGENGGVGGSSCVVDSVPKKRGRKSKKEKEDVEKKMLEEKDAQNENHGENGGVGGSSSVVEAVVKKRGRKSKKEKEDMEKKMLEEKDAQNENHGENGGVGGSSSVVDGVPKKRGRKSKKEKEDMEKKMLEGNLLEKKDVQDVNHAENGGVPDMRRGSKRKMLKEDDGEFEMPVDSSGSSIQKQYSLRAPRVNIEEAMPKINKRDPKQWIEEESLMCHQCQRNDKGRVVRCTRCKRKRFCVLCIENWYPHLKEDYIAEACPVCRGNCNCKACLRSNQLIKKMKKKEETNENEKIELSMHLLQVLLPYLRLLDEEQMIENETEAKIRGLSVSELNVAQANFDKDERVYCDNCKTSIFDYHRSCTKCSFDLCLICCRELRTGQLVGGADPIMLEFVCQGRDYLHGEENISVKQNEPNAVEQNEPNAVERNEPNAVAETVVREWSRSGWHAESNGSIPCPKVNDECNHGFLELRSILGQHFITDLVHKANELAQAYKLQDVVKTPDNFCSCLRLDRNTDVRYNNMRKVASRADSRDNYLYCPRAVDLQDEDLRHFQWHWEKGEPVIVSNVLAKTSGLSWEPLVMWRAFRQMTKTKHEQHLDVKAIDCLDWCEGEINIHQFFTGYTKVREDWHSWPQILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPLKGSLNLAVKLPTDCLKPDMGPKTYIAYGFHQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLEPKHLIAIEKLKQKHFEQDKRELLGDDQNRETSVDMLNNLSSTINALDKQNSVQVMEHKGKLYDRKEVDQFHQPSGGNEIAIANEDGLSCESEHKEVDKVKIKQESDMLSGGDGSEGALWDIFRRQDVPKLQEYQRKHFREFRHLHCCPLKQVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFIQKVGDAVFVPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHMSCEDKLEVKKMTIYAMQDVIEKLEEARSGKTKVSE* 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0832 1142 MobiDBLite consensus disorder prediction 1 264 - -
Gso20g0832 1142 MobiDBLite consensus disorder prediction 202 231 - -
Gso20g0832 1142 SUPERFAMILY Clavaminate synthase-like 685 1120 - -
Gso20g0832 1142 ProSiteProfiles Zinc finger RING-type profile. 355 402 IPR001841 -
Gso20g0832 1142 MobiDBLite consensus disorder prediction 68 92 - -
Gso20g0832 1142 MobiDBLite consensus disorder prediction 31 47 - -
Gso20g0832 1142 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 350 417 IPR018866 -
Gso20g0832 1142 MobiDBLite consensus disorder prediction 156 185 - -
Gso20g0832 1142 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 45 1132 IPR045109 GO:0032454|GO:0033169
Gso20g0832 1142 ProSiteProfiles JmjC domain profile. 807 1100 IPR003347 -
Gso20g0832 1142 Coils Coil 119 139 - -
Gso20g0832 1142 MobiDBLite consensus disorder prediction 13 30 - -
Gso20g0832 1142 Coils Coil 413 433 - -
Gso20g0832 1142 Coils Coil 164 184 - -
Gso20g0832 1142 SMART cupin_9 788 1100 IPR003347 -
Gso20g0832 1142 MobiDBLite consensus disorder prediction 118 139 - -
Gso20g0832 1142 MobiDBLite consensus disorder prediction 248 264 - -
Gso20g0832 1142 Gene3D Cupin 674 1109 - -
Gso20g0832 1142 Coils Coil 210 231 - -
Gso20g0832 1142 Pfam JmjC domain, hydroxylase 986 1083 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0832 Gso-Chr20 37693063 37713514 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso20g0832 JmjC 1.4e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0832 K15601 - gmx:112997634 2043.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0832 20 37693063 37713514 Gso10g2503 10 52075340 52082444 GST