Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0828 ATGGAGAACGACACTGCCGCCGCCGTTAACAATAACACCACCGCCACCGCCACCGCGAAAGCAGGTTCTGGAGGAGTGAAATCGAACAACCATAACCTAGAAGAGGAGCATTCCAATTTGAATGGCGAGGAGCACATGGCAGAACAAGTGGAGGCAGAAGAAGAGGAAGATCGAGAAGCCGATGATGGTGAAGGAGAACAAACTGGATCTCGTCAACCTTCCAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCTCTCGCTCGAACCCTTCAGGAACAGGAAAGGGCATATATGATGCTGAGAATGAATAATGAAGGAAGTGATTATGGAAGTTGGGAAGGCGGAAGCTATTTGCATGATGACGGAGATGATTTTGATGATCTACATGATGGCACTGATGTGGATGAGGATGAAGATGATGATGATGATGAAGATGATGATGATGAGGAGGATGAGGATGAAGATGCATTTGATGTCCATGCTCATGCTAGTGCTGGAGAACATGATAATCCCACTATTGAATTTGACCCAGATGTATTTTCAAGTGATGAAGCATATGCAAGAGCATTACAAGAAGCCGAAGAGAGGGAAATGGCAGCTAGACTATTGGCTTTTGCTGGGATAAATGATCGGGAAGAAGAGGACATAGAGGAGCATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATATGAGGAATTACTGGCATTGGGTGAAGCAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTATTGCCTGTTTGCCTTCAGTCAACTACAAGACTGGGAGTGATCAACATGGAAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGATGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTTTGTAGTACTGAGGTATCTGCTTCTGGGAGCAACTTGTAG 1008 0.4554 MENDTAAAVNNNTTATATAKAGSGGVKSNNHNLEEEHSNLNGEEHMAEQVEAEEEEDREADDGEGEQTGSRQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEDEDDDDDEDDDDEEDEDEDAFDVHAHASAGEHDNPTIEFDPDVFSSDEAYARALQEAEEREMAARLLAFAGINDREEEDIEEHGANSQDAWEDVDPDELSYEELLALGEAVGTESRGLSTDTIACLPSVNYKTGSDQHGSNDSCVICRVDYEDDESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0828 335 Pfam Ring finger domain 282 324 IPR001841 -
Gso20g0828 335 SMART ring_2 284 324 IPR001841 -
Gso20g0828 335 MobiDBLite consensus disorder prediction 109 182 - -
Gso20g0828 335 Coils Coil 33 53 - -
Gso20g0828 335 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 24 333 IPR043312 -
Gso20g0828 335 MobiDBLite consensus disorder prediction 30 47 - -
Gso20g0828 335 CDD RING-H2_PA-TM-RING 284 324 - -
Gso20g0828 335 MobiDBLite consensus disorder prediction 130 160 - -
Gso20g0828 335 MobiDBLite consensus disorder prediction 67 83 - -
Gso20g0828 335 MobiDBLite consensus disorder prediction 161 178 - -
Gso20g0828 335 ProSiteProfiles Zinc finger RING-type profile. 284 325 IPR001841 -
Gso20g0828 335 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 24 333 - -
Gso20g0828 335 MobiDBLite consensus disorder prediction 1 83 - -
Gso20g0828 335 MobiDBLite consensus disorder prediction 48 63 - -
Gso20g0828 335 SUPERFAMILY RING/U-box 275 329 - -
Gso20g0828 335 MobiDBLite consensus disorder prediction 1 29 - -
Gso20g0828 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 331 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0828 Gso-Chr20 37668562 37675636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0828 65 228 C3H Transcription Factor Family AT3G19910 51.205 5.85e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0828 K19045 - gmx:100787418 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0828 20 37668562 37675636 Gso10g2506 10 52100918 52105756 GST