Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0822 ATGTCTTCCGGCGGCGGCGGAGGCGGAGCAAAGCCGTTCTTCTGCCACGTGTGCAGTCAGAGGATCACGTGCTCCGATGAGTCGGAACCCTTCTGCCCGATCTGTATGGAAAGTTTCGTAGAAGAATGCAACCCTAACAACCCTAACCCTAATCTTTTCCCCGAGAATGAGGAATCTTCTGATTCCGAAATCTCCTTCTCCCTGCTCCCTCTCTTTCTCTCCACCGTATCCAGGTCCCGACCCGAACCCGACATGTTCGACCCGATGGTTTTCCTCCAAAACCACATTCAGGGCCTTCGCGCCGACGGCGCCAACATCCAAGTTGACTTTGGCCACCCTTCCGAGCAGCAAGGGTTTCGCCTCCCTGCGAACATCGGCGACTACTTCATGGGCCCCGGCCTTGAGCAGTTCATTCAGCAGCTCGCCGACAATGATCCCAACCGCTACGGCACGCCTCCCGCCGCCAAGGACGCCGTCGAGAATCTCCCCACCATCACCGTCGACGACGAGTTGTTGAACTCCGAGCTGAACCAGTGCGCGGTCTGCCAGGACGAGTTCGAGAAGGGCTCTCTGGTGACGCAGATGCCCTGCAAGCACGCGTACCACGGCGACTGCTTGATTCCGTGGCTTCGACTGCATAACTCATGTCCTGTGTGCCGGTATGAATTGCCCACCGACGACGCGGATTACGAGAATGAGGTTCGCGGGAATGGCGGTGACGGCGGGTCGAGGACTGGTGGGAGCGGCGACGGTGGTGGTGGAAGCGGCGGTGGAGGCGGAGGGGGGAGTAATAGACCTGTTCGCAGGACTGTTAGAATATATTTGCGGCATCCTGATGCTGCTGACTCCGCGCAGGACAGTGCTGAAAGGGGATGGGAGTGGGGAAGTTGGGATTGA 897 0.5875 MSSGGGGGGAKPFFCHVCSQRITCSDESEPFCPICMESFVEECNPNNPNPNLFPENEESSDSEISFSLLPLFLSTVSRSRPEPDMFDPMVFLQNHIQGLRADGANIQVDFGHPSEQQGFRLPANIGDYFMGPGLEQFIQQLADNDPNRYGTPPAAKDAVENLPTITVDDELLNSELNQCAVCQDEFEKGSLVTQMPCKHAYHGDCLIPWLRLHNSCPVCRYELPTDDADYENEVRGNGGDGGSRTGGSGDGGGGSGGGGGGGSNRPVRRTVRIYLRHPDAADSAQDSAERGWEWGSWD* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0822 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 226 IPR013083 -
Gso20g0822 298 SUPERFAMILY RING/U-box 158 226 - -
Gso20g0822 298 MobiDBLite consensus disorder prediction 230 298 - -
Gso20g0822 298 SMART ring_2 179 219 IPR001841 -
Gso20g0822 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 79 282 - -
Gso20g0822 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 79 - -
Gso20g0822 298 Pfam Zinc finger, C3HC4 type (RING finger) 178 219 - -
Gso20g0822 298 PANTHER OS06G0101300 PROTEIN 79 282 - -
Gso20g0822 298 PANTHER OS06G0101300 PROTEIN 8 79 - -
Gso20g0822 298 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0822 Gso-Chr20 37642057 37644757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0822 123 231 C3H Transcription Factor Family AT5G01980 47.706 8.46e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0822 K11982 - gmx:100785289 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0822 20 37642057 37644757 Gso10g2510 10 52120867 52123529 GST