Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0816 ATGTCTCAGACATCCACTGTCCTGCCTGCCTTCCACTCCATCAAATCATTGCCTCCTGAGTTCAACCCCGTTCTCGTGGAAAAACATGGAGATGTTAAATTTAGACACACCAATCCGATTGGATCAAATGGCCTTGAAAATGGTGCACTGGTAGCGGAGATTTCTAAGGAAGTTAACTGCCGTGCTGGTGGCATGGATCTTTTTGATGAGGACTCGCCGTATGGTGGAAAAGGTAGATCATTAAAAGACCGGCCGTCTAATGCAGATGAAGACTCAGTATCTGTTTCGTTGCCCCTCCCATCGATTTTGACATCCTCTAGGGAAAGCAGGTGGAATGATGCAAATCCTTATGGTTCAAAAAAGAAGCTTCAGTCCTGGCTTCAGCTACCAAATGGGGATTGGGAGCTGGTAAAGATAATAACAACTTCTGGAGCTGAATCTGTCATTTCACTGCCTGATGGGAAAGTTTTAAAGGTGAAAGAGGAGAGTTTGGTGCCAGCTAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAACTAAGTTATTTAAATGAGCCATCGGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATACAAAAGCTGGGCCTGTTTTGGTTGCTGTAAATCCATTTAAGAAAGTTCCTCTGTATGGTAATGACTACATTGAAGCCTACAAGTGTAAATCAATTGAAAGCCCTCATGTATATGCAATTACTGACACAGCCATCCAAGAAATGATACGGGATGAAGTGAATCAATCTATAATTATAAGTGGTGAGAGTGGAGCAGGGAAGACTGAGACGGCAAAAATAGCAATGCAGTACTTGGCTACCCTTGGTGGTGGAAGTGGAATAGAGAATGAGATATTAAAGACTAATCCGATACTAGAAGCCTTTGGTAATGGAAAAACATTAAGGAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATATCTGGTGCTAATATTCAAACATTTTTGCTGGAAAAGTCTAGAGTAGTCCAATGCAACGAAGGGGAAAGGTCATATCATATATTTTATCAGCTATGTGCTGGAGCACCATCATCACTTAGGGAAAAGCTAAATCTAACAAGTGCTGAGGACTATAAATATCTGAGGCAGAGCAATTGTTATTCAATTACGGGAGTTGATGACGCAGAAGAATTTCGCATAGTCAAGGAAGCTCTGGATGTTGTCCACATTAGCAAAGGAGACCAGGAGAATGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGAAACATATCATTTATTGTGGTAGATAATGAAAATCATGTTCAAGCTGTTGAGGATGAAGGACTGTTCACTGTTGCCAAGTTAATTGGTTGTGAAATTGAAGACCTGAAGTTGACTTTATCAACTCGCAAAATGAAAGTTGGTAATGATATTATTGTCCAGAAGTTGACTCTATCTCAGGCTATTGATGCAAGAGATGCTTTGGCGAAGTCAATATATGCTTGTCTGTTTGATTGGTTGGTTGAACAAATAAACCAATCCCTTGCGGTTGGCAAAAGACGAACTGGCAGATCAATCAGCATCCTAGATATTTATGGCTTTGAGTCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAGAGATTACAACAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATCCAAGATGGAATTGATTGGGCTAAAGTTGAATTTGAAGACAATCAAGATTGCCTTAATCTTTTTGAAAAGAAACCACTGGGGCTACTATCCCTGTTAGATGAAGAGTCAACTTTCCCTAATGGCACAGATTTAACCTTTGCTAACAAGCTTAAGCAGCATTTGAATTCCAACTCATGCTTCAAAGGAGAACGAGAAAAAGCCTTTACTGTGCGTCATTATGCAGGGGAGGTCACTTACGATACATCTGGATTCCTGGAAAAGAACAGGGACCTATTGCACTTGGATTCCATCCAACTTCTATCCTCAAGCAAATGTCATCTTCCTAAGTTATTTGCATCCCATATGCTTACTCAATCTGAGAAGCCTGTGGTAGGTCCCTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGCGTTGCCACAAAATTCAAGGGACAATTGTTCCAATTGATGCAACGTTTAGAGAGTACTACACCACATTTTATCCGATGCATCAAGCCCAATAATCTCCAATCACCTGGATCATATGAGCAAAGCCTTGTACTGCAGCAGTTGAGATGTTGTGGGGTCCTGGAAGTGGTTCGGATATCAAGATCGGGCTTTCCTACTAGAGTATCTCACCAAAAGTTTGCCAGAAGATATGGTTTTCTTCTCCTTGAAAATGTTGCCTCTCAGGATCCACTTAGTGTTTCAGTTGCTATTCTTCATCAATTCAACATTTTGCCTGAGATGTATCAAGTTGGCTACACGAAACTATTCTTTCGAACAGGGCAGATTGGAGTGCTTGAAGATACCAGAAATCGTACCCTGCATGGAGTTTTACGTGTGCAAAGTTGCTTCAGGGGTTACCGAGCTCGTTGTTATCGCAAGGAGCTTTGGAGAGGAATCACTACTCTCCAATCATTTATTAGAGGAGAGAAAAGCAGAAAGGAATATGCAGCTTTGCTTCAGAGACATAGGGCTGCTGTTATTATACAAAAGCGGATGAAAACAGTACTTTCAAGGAACAGAATGAAAAGTATTAATGGTGCTGCAGTTGTCATACAATCATTTATTCGTGGTTGGTTAGTCAGAAGATGCTCAGGAGATATAGGACTATCAAAACCTCGGGGCATTAAGACTAATGAGTCAGATGAGGTTCTGGTGAAGTCATCTTTCCTGGCTGAATTACAGCGCCGGGTACTTAAGGCAGAAGCTTCCCTGAGAGAGAAAGAAGAGGAAAATGACATTCTTCACCAACGCCTTCAACAGTATGAGAACAGATGGTCTGAATACGAATTAAAGATGAAATCCATGGAAGAAGTATGGCAGAAACAAATGAGGTCTCTACAGTCTAGCCTCTCTATTGCAAAGAAGAGCCTTGCTATGGATGATTCTGAAAGAAATTCAGATGCTTCTGTTAATGCAAGTGATGACAGGGATTTCAGCTGGGATGTAGGAACCAATCACCGGCGCCAAGAAAGCAATGGGGCAAGATCAATGAGTGCTGGTTTGAGTGTTATAAGTCGGTTGGCTGAAGAATTTGAGCAGAGGAGTCAAGTGTTTGGTGATGATGCAAAGTTCTTGGTAGAGGTAAAATCTGGTCAAGTTGAAGCAAGTTTGAACCCAGACAGAGAGCTTAGAAGGTTAAAACAAATGTTTGAGGCTTGGAAAAAGGATTATGGTGCAAGACTACGTGAAACAAAGGTCATTTTGCATAAACTTGGAAGTGAAGATGGATCAATTGAGAAAGTGAAGAAAAGTTGGTGGGGAAGAAGGAATAGTACAAGAATAAGTTGA 3513 0.4073 MSQTSTVLPAFHSIKSLPPEFNPVLVEKHGDVKFRHTNPIGSNGLENGALVAEISKEVNCRAGGMDLFDEDSPYGGKGRSLKDRPSNADEDSVSVSLPLPSILTSSRESRWNDANPYGSKKKLQSWLQLPNGDWELVKIITTSGAESVISLPDGKVLKVKEESLVPANPDILDGVDDLMQLSYLNEPSVLFNLQYRYNHNMIYTKAGPVLVAVNPFKKVPLYGNDYIEAYKCKSIESPHVYAITDTAIQEMIRDEVNQSIIISGESGAGKTETAKIAMQYLATLGGGSGIENEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPSSLREKLNLTSAEDYKYLRQSNCYSITGVDDAEEFRIVKEALDVVHISKGDQENVFAMLAAVLWLGNISFIVVDNENHVQAVEDEGLFTVAKLIGCEIEDLKLTLSTRKMKVGNDIIVQKLTLSQAIDARDALAKSIYACLFDWLVEQINQSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGEREKAFTVRHYAGEVTYDTSGFLEKNRDLLHLDSIQLLSSSKCHLPKLFASHMLTQSEKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPGSYEQSLVLQQLRCCGVLEVVRISRSGFPTRVSHQKFARRYGFLLLENVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGVLRVQSCFRGYRARCYRKELWRGITTLQSFIRGEKSRKEYAALLQRHRAAVIIQKRMKTVLSRNRMKSINGAAVVIQSFIRGWLVRRCSGDIGLSKPRGIKTNESDEVLVKSSFLAELQRRVLKAEASLREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSERNSDASVNASDDRDFSWDVGTNHRRQESNGARSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLNPDRELRRLKQMFEAWKKDYGARLRETKVILHKLGSEDGSIEKVKKSWWGRRNSTRIS* 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0816 1170 CDD MYSc_Myo8 187 833 IPR036022 -
Gso20g0816 1170 PRINTS Myosin heavy chain signature 203 222 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0816 1170 PRINTS Myosin heavy chain signature 257 282 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0816 1170 PRINTS Myosin heavy chain signature 299 326 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0816 1170 PRINTS Myosin heavy chain signature 531 559 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0816 1170 PRINTS Myosin heavy chain signature 584 612 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0816 1170 Pfam Myosin head (motor domain) 175 833 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0816 1170 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 9 1169 - -
Gso20g0816 1170 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 120 169 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gso20g0816 1170 MobiDBLite consensus disorder prediction 72 89 - -
Gso20g0816 1170 Gene3D - 778 846 - -
Gso20g0816 1170 MobiDBLite consensus disorder prediction 65 95 - -
Gso20g0816 1170 Pfam IQ calmodulin-binding motif 922 937 IPR000048 GO:0005515
Gso20g0816 1170 Pfam IQ calmodulin-binding motif 851 866 IPR000048 GO:0005515
Gso20g0816 1170 Pfam IQ calmodulin-binding motif 873 890 IPR000048 GO:0005515
Gso20g0816 1170 SMART MYSc_2a 167 846 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0816 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 893 IPR027417 -
Gso20g0816 1170 Gene3D - 355 414 - -
Gso20g0816 1170 ProSiteProfiles IQ motif profile. 919 948 IPR000048 GO:0005515
Gso20g0816 1170 ProSiteProfiles IQ motif profile. 872 899 IPR000048 GO:0005515
Gso20g0816 1170 Gene3D Kinesin motor domain 176 774 IPR036961 -
Gso20g0816 1170 ProSiteProfiles IQ motif profile. 849 876 IPR000048 GO:0005515
Gso20g0816 1170 MobiDBLite consensus disorder prediction 1032 1046 - -
Gso20g0816 1170 MobiDBLite consensus disorder prediction 1032 1051 - -
Gso20g0816 1170 PANTHER MYOSIN 9 1169 - -
Gso20g0816 1170 Gene3D - 541 735 - -
Gso20g0816 1170 ProSiteProfiles Myosin motor domain profile. 173 845 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso20g0816 1170 Coils Coil 965 1013 - -
Gso20g0816 1170 Gene3D - 849 897 - -
Gso20g0816 1170 Gene3D - 898 939 - -
Gso20g0816 1170 SMART iq_5 895 917 IPR000048 GO:0005515
Gso20g0816 1170 SMART iq_5 869 891 IPR000048 GO:0005515
Gso20g0816 1170 SMART iq_5 918 940 IPR000048 GO:0005515
Gso20g0816 1170 SMART iq_5 846 868 IPR000048 GO:0005515
Gso20g0816 1170 Gene3D Myosin VI head, motor domain, U50 subdomain 416 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0816 Gso-Chr20 37581957 37595175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0816 7 1168 Myosins gene family AT1G50360 75.962 0.0 1792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0816 - K10357 gmx:100782618 2306.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0816 20 37581957 37595175 Gso10g2515 10 52170962 52184759 GST