Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0811 ATGTCGGAAGCACCACCGCCTCCAACCGCCGATGCGTCACCGCCTCCGTACTGGTGCTACCACTGCGAGAAGCGCGTCTCCGTCGAAACGCTCGCGAATCTCCCCGACGTCGTCTGCGGCGAGTGCAAGAACGGCTTTGTGGAATCCATGCCCACGCCGTCGCGCTCTCGCTCCCCCTCCGCCTCCTCCGACGACCCCTACTTCGGCTCGCAGTTCCTCCAGGTCCTTCGCCTAATCGCTCAGTCGGCGCGTGACGACGACGCGTCGCCTCCGCCGCCGCCGAGCCGCTCTCCGGAGAACGATTTCCTCAGGATCGAGCTCGGCGGCTGGGACAACGACGAGGAGAACGAAAACGACGACGATAACGGCGACGAGGAGTTCGAGGAACACGAGGAGGCGGAGGATCGCTCCGGCAACGAAGATCCGCACGGAGGAGACGACGAGGATCTGAGAAGAAGGAGGCGCGAGCTGCTTCGGCTTCGGATTAGGGATTTGGCGACTCGTACGAGGAGCATGCGGAACCGGATCTTGGATTGGGCCGAGATTCTGATGGGCCTCGAGGACAATTCCATCGAGTTCCGCCTCCAGCTGCCAGAATCCGACCGCTACGTCGGAAATCCCGAGGATTACGTCGACGCGGCAGAGTACGAGGCGCTACTGCAGACGCTGGCGGAGAGCGACGGGGGAGGCAGGAGAGGAGCGCCGCCGGCGTCGAAGGCCGCGCTGGAAGCCTTGCCGACGGTGAAAATTGCGTCGGAAAGCGAAGCCGTGGCGTGCGCTATATGTAAAGATTTGCTCGGTGTTGGAGACGCGGCGAAGAGGTTGCCGTGTGGGCATCGGTATCATGGAGATTGCATTGTTCCTTGGTTGAGTTCTCGAAATTCTTGCCCTGTTTGCAGGTTTGAGCTACCAACGGATGATAAGGAATACGAGGAAGAGAGAGTGGTTATCGCTGCTTCTTCGAATTCGAACGGAGCTTCGAGTTCCGGTGGAGGTGGAAGTGCCATTGTTTGA 1014 0.6065 MSEAPPPPTADASPPPYWCYHCEKRVSVETLANLPDVVCGECKNGFVESMPTPSRSRSPSASSDDPYFGSQFLQVLRLIAQSARDDDASPPPPPSRSPENDFLRIELGGWDNDEENENDDDNGDEEFEEHEEAEDRSGNEDPHGGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLQLPESDRYVGNPEDYVDAAEYEALLQTLAESDGGGRRGAPPASKAALEALPTVKIASESEAVACAICKDLLGVGDAAKRLPCGHRYHGDCIVPWLSSRNSCPVCRFELPTDDKEYEEERVVIAASSNSNGASSSGGGGSAIV* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0811 337 MobiDBLite consensus disorder prediction 109 150 - -
Gso20g0811 337 Pfam Ring finger domain 259 300 IPR001841 -
Gso20g0811 337 Pfam zinc-ribbon 17 50 IPR039525 GO:0061630
Gso20g0811 337 MobiDBLite consensus disorder prediction 43 69 - -
Gso20g0811 337 MobiDBLite consensus disorder prediction 136 150 - -
Gso20g0811 337 SMART ring_2 259 299 IPR001841 -
Gso20g0811 337 ProSiteProfiles Zinc finger RING-type profile. 259 300 IPR001841 -
Gso20g0811 337 MobiDBLite consensus disorder prediction 49 69 - -
Gso20g0811 337 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 32 332 - -
Gso20g0811 337 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 32 332 - -
Gso20g0811 337 SUPERFAMILY RING/U-box 254 306 - -
Gso20g0811 337 MobiDBLite consensus disorder prediction 112 135 - -
Gso20g0811 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 306 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0811 Gso-Chr20 37530722 37532154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0811 170 312 C3H Transcription Factor Family AT5G01980 48.667 8.04e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0811 - - gmx:100780991 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0811 20 37530722 37532154 Gso10g2520 10 52205404 52206852 GST