Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0799 ATGGACAGCCAGAATGGGTGTATATATATTAGTTCGTCAGATGATGACTTGGAGGAGATAGAAGATCCAAGGAGGACTCTTCCGCAATGGGCTACTAATACAGAGAAGAGTTCATATAATGGTGGATGGTCTAGGCGGGATAGTTCTTCAAGAGGGGCAAATAGTTCAAACCCAAGCTCTTCTAATGTTTATAATCATTCACAAGTTAAGCCTCAAACCCTGCCCGTGTCCAGCACCAATACACTGAACCATAGAATTGCACGAAGAGATGAACCTTCCTACCATGCCCTGAATGGAAACACAAGTCAGCAACAGACTGTTAGTTCCCGAATTTCAAATATTCATGGTGCAGATTATGAGAAAATGTCATCTCAGCAAGCTTTCAAGAGGACCCTTCCGTCATCTCTTCAACCTTCTGCAACAAGGGCTCTTCCTTCTTCATTTGCATCAGACAGCAGATTAAGAAACTTAAAAGATAACGCGAGCAGTAGTCAACTTCATGATGCATATAAGAATCGTCCCCATGGAGTAGGACCTAGCACGTCCAGTGACAGGGGCTACATTCGTGAAAATTTTGGCAGGGGCTATGATGAAGATCGTTTCTTGTATCAAAATGGTGGGAATAGGATTCTTCCTTCACCTTTGATGCTCGGAAAGGTTATATCTCCACAGTTTGCTACTTCTAGTGAATCTGCGTATCGTTCTGGAGCAGGTGATGAAAGGGCTGCTGAAAGTGATGAGAGACTAATTTATGAGGCAGCATTGCAGGATATCAGTCAACCTAAAACAGAATATGACTTACCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAATGATTTCCCTCATCCTGGCACAGAGGACATTACAGTCAAAATCGAAAATAGATGATACATGCAGTCATAAAACTGAAGCTTTGAATTTGGACGATGATGATGACAATGGTAGTGTTGATGTGGAAAAGCATAAAAATAGCGAAGAATCTGATGATATAAAACCTAGTAGAGAACCAAGCAGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCTGGTACACTAGTTGTCTGCCCTGCTAGTGTTCTTCGACAGTGGGCCAGGGAACTCGATGAAAAAGTTGGAGATGAAAAGCTTTCTGTTTTGGTTTATCATGGGGGCAGTAGGACAAAGGATCCTGTTGAGCTCGCAAAATTTGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTTCCCAAACAACCATTAGTTGAGGAGGATGATATTGATGAAAAAATGGGGGAAAGATTTGGGTTATCCTCTGAGTTTTCTGTTAGTAAAAAGAGGAAAAAGCCATTTAATGGAAATAAGAAGAGTAAAAAAGGTGGAAAGGGAATTGACAGTTCTTCTATTGAATGTGGTTCTGGTCCTCTTGCCAAAGTTGGTTGGTTTAGGGTTATTCTTGATGAGGCTCAAACGATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACTCCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGGTTCCTAAAGTATGATCCTTATGCTGTATACAAATCATTCTACAATACAATAAAAGTTCCAATATCCAAAAATACTATTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCAATTTGCCTCCCAAGACAATTGAGCTCAGTAAGGTGGATTTCTCGATTGAGGAGCGGGCATTCTACACCAAACTGGAATCAGATTCGCGTTCTCAATTTAAGGCATATGCTGCTGCTGGGACAGTGAGCCAAAACTATGCTAATATTCTTTTAATGCTTTTACGTCTCCGACAGGCTTGTGACCACCCGCTTCTTGTTAAAGATTTTGATTCTGATCCTGTTGGGAAGGATTCTGTCGAAATGGCAAAAAATCTTCCTAGGGAAATGCTGATTAATCTTTTTAATTGTTTGGAATCAACCTTTGCTATATGTCTTGTTTGCAACGATCCTCCTGAAGAGCCTGTTATTACGATGTGTGGTCATGTCTTCTGTTATCAATGTGTATCAGAATATTTGACTGGTGATGATAATACGTGCCCGTCAGTTAATTGTAAAGAACTAATTGGCGACGATCTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCATCTCTGATGATGGTGGCAGTGTTAGTTTTGCAAATTCACATCTTTGTGATTATTCACTAGTGCAGCAGCGTGACTACACTTCATCTAAAATCAAAGCTGTTCTTGAGGTTCTGCAGTCAAATTGTAAATTGAAGATTTCTAGTTCTGACTTACCGAACTCCTCTGGAGGTTGTAGAGATTCACCTTCTTTGGATAATTTACATGTTGAAGACTGCGATTCAGATGTTAGGGTTACAAAACACACAAGAAGGTATTCAGAGTCCACAACTGAAGGACCAATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGCTGGACTTAGTTGAGACATCGTTGAAACAATTTGGTATACAGTACCGGAGACTTGATGGTAGAATGACTCTGGGTGCGAGGGACAAAGCTGTTAAGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCTACAACTGAAGATCAAGCTATTGATCGAGCTCACAGAATTGGGCAAACTCGTCCTGTTACTGTGACACGAATCACTATAAAAGATACAGTTGAAGATAGGATACTGGCTCTTCAGGACGACAAGAGAAAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGCGCGTCTGGAACTCGCCTTACAGTAGATGATCTGAAGTATCTTTTCATGGTGTAG 3084 0.4089 MDSQNGCIYISSSDDDLEEIEDPRRTLPQWATNTEKSSYNGGWSRRDSSSRGANSSNPSSSNVYNHSQVKPQTLPVSSTNTLNHRIARRDEPSYHALNGNTSQQQTVSSRISNIHGADYEKMSSQQAFKRTLPSSLQPSATRALPSSFASDSRLRNLKDNASSSQLHDAYKNRPHGVGPSTSSDRGYIRENFGRGYDEDRFLYQNGGNRILPSPLMLGKVISPQFATSSESAYRSGAGDERAAESDERLIYEAALQDISQPKTEYDLPAGVLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMISLILAQRTLQSKSKIDDTCSHKTEALNLDDDDDNGSVDVEKHKNSEESDDIKPSREPSSSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLVYHGGSRTKDPVELAKFDVVLTTYSIVTNEVPKQPLVEEDDIDEKMGERFGLSSEFSVSKKRKKPFNGNKKSKKGGKGIDSSSIECGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNTIQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKTIELSKVDFSIEERAFYTKLESDSRSQFKAYAAAGTVSQNYANILLMLLRLRQACDHPLLVKDFDSDPVGKDSVEMAKNLPREMLINLFNCLESTFAICLVCNDPPEEPVITMCGHVFCYQCVSEYLTGDDNTCPSVNCKELIGDDLVFSKATLRSCISDDGGSVSFANSHLCDYSLVQQRDYTSSKIKAVLEVLQSNCKLKISSSDLPNSSGGCRDSPSLDNLHVEDCDSDVRVTKHTRRYSESTTEGPIKAIVFSQWTSMLDLVETSLKQFGIQYRRLDGRMTLGARDKAVKDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQDDKRKMVASAFGEDHAGASGTRLTVDDLKYLFMV* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0799 1027 ProSitePatterns Zinc finger RING-type signature. 736 745 IPR017907 -
Gso20g0799 1027 Pfam Zinc finger, C3HC4 type (RING finger) 721 757 - -
Gso20g0799 1027 CDD DEXDc_SHPRH-like 276 605 - -
Gso20g0799 1027 Gene3D - 472 618 IPR038718 -
Gso20g0799 1027 MobiDBLite consensus disorder prediction 27 79 - -
Gso20g0799 1027 Pfam SNF2-related domain 279 682 IPR000330 GO:0005524|GO:0140658
Gso20g0799 1027 SMART ultradead3 272 584 IPR014001 -
Gso20g0799 1027 SUPERFAMILY RING/U-box 719 765 - -
Gso20g0799 1027 MobiDBLite consensus disorder prediction 95 109 - -
Gso20g0799 1027 MobiDBLite consensus disorder prediction 340 386 - -
Gso20g0799 1027 SMART helicmild6 886 969 IPR001650 -
Gso20g0799 1027 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 856 1022 IPR001650 -
Gso20g0799 1027 MobiDBLite consensus disorder prediction 90 109 - -
Gso20g0799 1027 MobiDBLite consensus disorder prediction 122 190 - -
Gso20g0799 1027 ProSiteProfiles Zinc finger RING-type profile. 721 757 IPR001841 -
Gso20g0799 1027 CDD SF2_C_SNF 870 978 - -
Gso20g0799 1027 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 45 1026 - -
Gso20g0799 1027 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 291 567 IPR014001 -
Gso20g0799 1027 MobiDBLite consensus disorder prediction 477 497 - -
Gso20g0799 1027 MobiDBLite consensus disorder prediction 122 169 - -
Gso20g0799 1027 MobiDBLite consensus disorder prediction 1 79 - -
Gso20g0799 1027 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 45 1026 - -
Gso20g0799 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 1026 IPR027417 -
Gso20g0799 1027 Gene3D - 248 338 IPR038718 -
Gso20g0799 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 605 IPR027417 -
Gso20g0799 1027 SMART ring_2 721 759 IPR001841 -
Gso20g0799 1027 Gene3D - 373 459 IPR038718 -
Gso20g0799 1027 MobiDBLite consensus disorder prediction 340 369 - -
Gso20g0799 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 715 770 IPR013083 -
Gso20g0799 1027 Pfam Helicase conserved C-terminal domain 872 969 IPR001650 -
Gso20g0799 1027 Gene3D - 620 1026 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0799 Gso-Chr20 37406192 37417919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0799 12 927 RAD5 or RAD16-like Gene Family AT1G50410 55.927 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso20g0799 SNF2_N 5.6e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0799 - - gmx:100795142 1962.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0799 20 37406192 37417919 Gso10g2531 10 52288707 52300441 GST