Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0798 ATGGCATCATCTCAGTCGAGGAAGAGAGTTGACGCCGTCGATTCTCGCGCTGCTTCCGTTCTCGTTCGCGCCAAAGATGGCAGTGCTTTTGCTCGTTGCGACGATTGCAAGAAGAATGTGCCGGTTGCACTCATCGACATGCACAGTTGCAGCCTTGAAGCTAAAATTAAAATGAACCTAGACGCTCAAGTTGTGGAACAGGCTGCTGAAGCTAAGAAGCCGGAGAGGAAGAAGCCCAAATCTAAAGAGCCTATGGCAAAAAAAGCTAAAGTTGGGAAGGGGAAGAAAGTCAAGGATCCTAACATGCCTAAGCGTCCTCCCACAGCTTTCTTTGTCTTCTTGGATGATTTTAGAAAATCTTTCAAAGAAGCTAATCCTGATTCTAAGGATGTTAAAAGGGTTGGTAAAGAGGCTGGTGAAAAGTGGAGGTCTATGACTGATGAAGAGAAGAAGCCTTATCTTGACAAAGTTGCTGAGCTTAAGGAAGAGTACGAGAAGGCTATGGAAAGCTATGAAGCTGGTCAAGATGAAGAAGATCAAACTGTGTCTGATAAGGAAACTTCTGATAAGGAAGCTGCTGCAAAAGAAGTTGCAATAGAAGTTGAAGAGGAGCTAACTGACGAGGACTAA 630 0.446 MASSQSRKRVDAVDSRAASVLVRAKDGSAFARCDDCKKNVPVALIDMHSCSLEAKIKMNLDAQVVEQAAEAKKPERKKPKSKEPMAKKAKVGKGKKVKDPNMPKRPPTAFFVFLDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMTDEEKKPYLDKVAELKEEYEKAMESYEAGQDEEDQTVSDKETSDKEAAAKEVAIEVEEELTDED* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0798 209 Gene3D High mobility group box domain 98 174 IPR036910 -
Gso20g0798 209 MobiDBLite consensus disorder prediction 123 146 - -
Gso20g0798 209 SUPERFAMILY HMG-box 94 177 IPR036910 -
Gso20g0798 209 MobiDBLite consensus disorder prediction 165 209 - -
Gso20g0798 209 MobiDBLite consensus disorder prediction 68 102 - -
Gso20g0798 209 CDD HMGB-UBF_HMG-box 103 169 - -
Gso20g0798 209 MobiDBLite consensus disorder prediction 67 105 - -
Gso20g0798 209 Pfam HMG (high mobility group) box 103 172 IPR009071 -
Gso20g0798 209 SMART hmgende2 102 173 IPR009071 -
Gso20g0798 209 MobiDBLite consensus disorder prediction 165 200 - -
Gso20g0798 209 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 195 - -
Gso20g0798 209 Coils Coil 154 177 - -
Gso20g0798 209 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 195 - -
Gso20g0798 209 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 103 172 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0798 Gso-Chr20 37388979 37390720 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gso20g0798 HMG_box 2.3e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0798 K25507 - gmx:100306558 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0798 20 37388979 37390720 Gso10g2532 10 52309053 52310722 GST