Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0784 ATGAAGAGAGAAAGAGAAGTTGATAGTATAACCATGGCCAACTACTTGATGCTGCTTTCTCGAACCACCACCAACTTGAACACTTCCAACAACCGTGTGTTTGAGTGTAAGACATGTAACCGGCGGTTTGCGTCGTTTCAGGCATTGGGTGGCCACCGTGCGAGTCACAAGAAGCCAAGGTTGATGGGAGAGAGTGATAGCCAAGTGCTAATTCATGGTTCACCACCAAAGCCTAAAACACACGAATGTTCCATTTGTGGATTGGAGTTTGCAATAGGACAAGCTTTGGGAGGGCACATGAGGCGTCATAGAGCTGCAGCAGCATCAAATGGAAACATGCACACTACTATTAATTCTTGGTTGAGTTCTAGCAATAGTGGTGGTAGCACAGTTGATAATACTTTACCACCAAACATGAACAACAAGGCTAACAACACCAAGAGGGTTTTGTTTCCTGATTTGAATTTGACGCCTTTAGAGAATGATTTGGAGTTTTTGAAGTTTGGACAAGCAACTCCTTTAGTTCACTGCTTTAATTGA 540 0.4333 MKREREVDSITMANYLMLLSRTTTNLNTSNNRVFECKTCNRRFASFQALGGHRASHKKPRLMGESDSQVLIHGSPPKPKTHECSICGLEFAIGQALGGHMRRHRAAAASNGNMHTTINSWLSSSNSGGSTVDNTLPPNMNNKANNTKRVLFPDLNLTPLENDLEFLKFGQATPLVHCFN* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0784 179 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Gso20g0784 179 SUPERFAMILY beta-beta-alpha zinc fingers 32 103 IPR036236 -
Gso20g0784 179 Pfam C2H2-type zinc finger 33 59 - -
Gso20g0784 179 Pfam C2H2-type zinc finger 81 105 - -
Gso20g0784 179 PANTHER ZINC FINGER PROTEIN ZAT5 5 178 - -
Gso20g0784 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Gso20g0784 179 Gene3D Classic Zinc Finger 33 103 - -
Gso20g0784 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Gso20g0784 179 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Gso20g0784 179 PANTHER CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTOR 5 178 - -
Gso20g0784 179 SMART c2h2final6 34 56 IPR013087 -
Gso20g0784 179 SMART c2h2final6 81 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0784 Gso-Chr20 37235784 37236562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0784 1 170 C2H2 Transcription Factor Family AT2G37430 43.316 1.77e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g0784 zf-C2H2_6 9e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0784 - - gmx:100500316 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0784 20 37235784 37236562 Gso10g2545 10 52425533 52426397 GST