Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0780 ATGGTTCTATCAAACAAGAAACTGAAGCTTAAGCTGAGAGCTGAATTAGCCCAAAGAAACTCCAACGCCGCCGCCGAACCCCCTTCATCTTCATCTTCTACTAATAATAACAACTCTCTCAAAACTCTTCTGGACTCTGCCACCCCTAAAGCCAGATTCTCCAAAAGAGAGAAGCGAAGGAAGCTTCGATCCGACCAACCTTCACAACAAGCCAACAAGGAAATTCAAACTGAAACAGAAGCTGAGGGTTCGCCCAATAAGAAGAGAAAGAGGAAGAAGGTAGAGGGCGATGACGTGGCAGCAAATGGAGTTTCCGACACACCAAAGAACAAGAAGAAGAAGCAAAAACAGAAGAAGAACAAGAACAAGAACAAGAAGAAATCCACAACGGCGGAAGAAAACGAATCTAATGGTGGAGGGGAAATGCCAGAGGCTACAGAGTTAACCAAAACCAATACAACTACCAGTAAAGACAATGGTGATGCTCCTACAAACACGAAAGCTTATGTTGGAGGAATTCCCTATTATTCAACCGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGACTTTTCCTGAAACTGGCAAGTTTAGAGGGATTGCCATTATTACTTTCAAGACTGAGGCTGCAGCTAAAAGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAACTCGAGCCAATAAAGCCTCAGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGGATATATGTTGGAAATTTGTCGTGGGATATAACTGAGGAAGAACTAAGGAAATTCTTCAATGGTTGTGAGATAACATCGCTACGATTCGGTATGGACAAGGAGACAGGAGAGTTTCGAGGGTATGCCCATGTGGATTTCAGTGATAGTCAGTCACTGAAAACAGCCCTTGCATTGGACCAAAATGTTTTGTTTGGGAGACCTGTCAGGATAAGTTGTGCGGTTCCTTTGAAGAAAAAAACTGGAACTCATACAAGCTCCACGGTTAATGGAGCTAATGGTGATAAACCAAGTTCCACAGGAAGTGACAGGATAGATGGAGCTGATGGTGATAAACCAAGTTCCACAGGAAGTGGCAAGATGAGGAGGAGGACATGCTATGAGTGTGGTGAGAAAGGACATACATTTGCGGCATGCCCAAAGAAACAAACAGTTGCTGCAACTACAACCTAA 1236 0.4312 MVLSNKKLKLKLRAELAQRNSNAAAEPPSSSSSTNNNNSLKTLLDSATPKARFSKREKRRKLRSDQPSQQANKEIQTETEAEGSPNKKRKRKKVEGDDVAANGVSDTPKNKKKKQKQKKNKNKNKKKSTTAEENESNGGGEMPEATELTKTNTTTSKDNGDAPTNTKAYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPETGKFRGIAIITFKTEAAAKRALALDGADMGGLFLKIQPYKATRANKASDFAPEILEGYNRIYVGNLSWDITEEELRKFFNGCEITSLRFGMDKETGEFRGYAHVDFSDSQSLKTALALDQNVLFGRPVRISCAVPLKKKTGTHTSSTVNGANGDKPSSTGSDRIDGADGDKPSSTGSGKMRRRTCYECGEKGHTFAACPKKQTVAATTT* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0780 411 MobiDBLite consensus disorder prediction 146 163 - -
Gso20g0780 411 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 60 408 - -
Gso20g0780 411 SUPERFAMILY Retrovirus zinc finger-like domains 373 405 IPR036875 GO:0003676|GO:0008270
Gso20g0780 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 243 IPR000504 GO:0003723
Gso20g0780 411 MobiDBLite consensus disorder prediction 342 361 - -
Gso20g0780 411 ProSiteProfiles Zinc finger CCHC-type profile. 387 402 IPR001878 GO:0003676|GO:0008270
Gso20g0780 411 MobiDBLite consensus disorder prediction 22 45 - -
Gso20g0780 411 MobiDBLite consensus disorder prediction 80 99 - -
Gso20g0780 411 MobiDBLite consensus disorder prediction 111 125 - -
Gso20g0780 411 SUPERFAMILY RNA-binding domain, RBD 254 343 IPR035979 GO:0003676
Gso20g0780 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 234 IPR000504 GO:0003723
Gso20g0780 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 330 IPR000504 GO:0003723
Gso20g0780 411 Gene3D - 360 410 - -
Gso20g0780 411 Gene3D - 257 346 IPR012677 -
Gso20g0780 411 CDD RRM1_PHIP1 168 239 IPR034361 -
Gso20g0780 411 SMART rrm1_1 167 239 IPR000504 GO:0003723
Gso20g0780 411 SMART rrm1_1 262 333 IPR000504 GO:0003723
Gso20g0780 411 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 60 408 - -
Gso20g0780 411 MobiDBLite consensus disorder prediction 13 167 - -
Gso20g0780 411 Gene3D - 97 251 IPR012677 -
Gso20g0780 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 337 IPR000504 GO:0003723
Gso20g0780 411 SUPERFAMILY RNA-binding domain, RBD 159 243 IPR035979 GO:0003676
Gso20g0780 411 MobiDBLite consensus disorder prediction 342 384 - -
Gso20g0780 411 CDD RRM2_PHIP1 262 333 IPR034362 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0780 Gso-Chr20 37213934 37215959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0780 165 335 Eukaryotic Initiation Factors Gene Family AT3G16380 29.670 1.58e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0780 - - gmx:100814693 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0780 20 37213934 37215959 Gso10g2548 10 52447232 52449207 GST