Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0769 ATGGAAGATATTTACAAGATGAACCCTCTTCTGTCATGTCCCGGGGGTGATGTTGTTAGGGAGGTCAACGTCAACGTTAATTCTGCCATTGCAGCTTCCGCTTCTGAATTGAATCTTGGACTGGTTGCTAACAACTTCTTTCAGCTGGAAGAACCCGAAAGTTCGGATATGTCGGATCGGTTCATCAAGACCCAGATCGCCACTCATCCTCTCTATCCAAATCTAGTATCCGCTTACATAGAATGCCGAAAGGTTGGAGCACCGCCAGAACTGGCTTCACTTCTTGAAGAAATAGCCCGTGAAAGCCACCCAACCGATGCTCTTCGAGAGATAGGAAATGATCCTGAGCTTGACGAGTTCATGGAATCATACTGCGAAGTTCTTCATAGATACAAGCAGGAGTTGTCGAAGCCATTCAACGAAGCGACCTTGTTTTTGTGCAGTATCGAATCACAACTCAGCAATCTTTGTAAGGGAACGCAAACAATGCCACTGAATAACAACCGCTCAGATGAGGCTGCAGGAATATCAGAGGATGAATTAAGTTGGGAGAAGGTGGAAGCAGTTGATGGTGACGAATCTTCTGGCCCACGTCCAGGTGATCAAGAGCTTAAAGAAATGCTTCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTGAGAAAGGAATTTCTAAAGAAAAGGAAAAAAGGTAAGCTACCAAAGGATGCAAGGATGATACTCATGGACTGGTGGAACACACACTATAGGTGGCCTTATCCTACGGAGGAAGAGAAAGTGCAGCTATCAGAAATGACCGGACTTGATCAAAAGCAGATCAATAATTGGTTCATCAATCAAAGGAAACGGCATTGGAAACCAACAGAGGACATGCGATTTGCCATTATGGATGGTGTAAGTGGCAGTGGCTTAGGAGGACCTATGTGA 924 0.4491 MEDIYKMNPLLSCPGGDVVREVNVNVNSAIAASASELNLGLVANNFFQLEEPESSDMSDRFIKTQIATHPLYPNLVSAYIECRKVGAPPELASLLEEIARESHPTDALREIGNDPELDEFMESYCEVLHRYKQELSKPFNEATLFLCSIESQLSNLCKGTQTMPLNNNRSDEAAGISEDELSWEKVEAVDGDESSGPRPGDQELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKDARMILMDWWNTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPTEDMRFAIMDGVSGSGLGGPM* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0769 307 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677|GO:0006355
Gso20g0769 307 Pfam KNOX2 domain 111 157 IPR005541 GO:0003677|GO:0005634
Gso20g0769 307 SMART KNOX1_2 60 104 IPR005540 GO:0003677|GO:0005634
Gso20g0769 307 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 297 - -
Gso20g0769 307 Pfam ELK domain 203 224 IPR005539 GO:0003677
Gso20g0769 307 SUPERFAMILY Homeodomain-like 225 298 IPR009057 -
Gso20g0769 307 CDD homeodomain 235 286 IPR001356 GO:0003677
Gso20g0769 307 SMART HOX_1 225 290 IPR001356 GO:0003677
Gso20g0769 307 Pfam KNOX1 domain 62 103 IPR005540 GO:0003677|GO:0005634
Gso20g0769 307 ProSitePatterns 'Homeobox' domain signature. 261 284 IPR017970 GO:0000981|GO:0006355
Gso20g0769 307 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677
Gso20g0769 307 SMART ELK_2 203 224 IPR005539 GO:0003677
Gso20g0769 307 Gene3D - 221 293 - -
Gso20g0769 307 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677
Gso20g0769 307 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 297 - -
Gso20g0769 307 SMART KNOX2_2 107 158 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0769 Gso-Chr20 37069136 37074683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0769 62 301 Homeobox Transcription Factor Family AT1G23380 54.941 1.71e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso20g0769 KNOX2 1.8e-23 No_clan