Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0762 ATGGATTTCCATGGATTCCTAAACGACTTGCAGGATTGGGAATTTTCTAGAAAGGATAAAGCACGACCACAAAAGGAAAATGCTTCATCTTCTCGAATTACGGGATCTGTGGGTGTGGAGAAGGCATCAAAAGGAGATACCATTTCTTTTGATAATGCAAGAAATTCTCCAGGACAGTATGATTTATCAAGAATTAATCATTTGCATAGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCCGAGAAAGACCTGGGTAACGAGTTTTTCAAGCAGAAAAAGTTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCTTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCAATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGCACAGAGGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGAAGAGCAACAGCTAGAAAAGAACTTGGAAAAATTAAAGAATCAATGGACGATGCTGAATTTGCCTTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGTCTTTCTATGAGAAAGATATTCTTCAGAAAGCATCAGGGGTTCTGAGAAGCACTGTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGGAAAAAGTTAATGGAGACAGCATCCACCCCATTTCACGTAGTACTCAAAAGTCTGGACTAGCTGAAGTTCATCATCATAAAAAGGATAATAAACGGCAAATACTTGTTAAAGAATCACTCTTAACAGAGGATGTTGATGGCAGAGAAATAAAAGCCAGAAGCTGGCCTCAATCACAAGGAGATGATGGTTCTAAGGGAGGTTTGAGTGCAAGCAACAGTTTGGAGCAGAGAAATCACAGAATTACCAAGCCAGAAATGAAAGCTTCTGTTCAACAGCTTGCTTCTCGCGCTGCTTCTAGAGCCATGTCTGAAGCTGCCAAAAACGTAACACCTCCAACTACAGCTTATCAGTTTGAGGTCTCCTGGAGAGCATTTTCAGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCATGAATTGCCGAAAATATTCAAAAATGCCTTGTCTTCTACCATACTAATTGAGATCATCAAGTGTCTTGCATCTCTTTTCACTGAGGACATGGATCTGGTTGTCAGTTATTTGGAGCATTTGACCAAGGTACCAAGATTTGATGTGATTGTAATGTGCCTTTCATCAACAAATAAGGATGACATACGCAAGATCTGGGATGAAGTGTTCAGCGGTGAGGCAACACCAATAGAGTATGCAGAGATTCTGGACAACCTTCAATCAAAGTTCGGCCTTGGACAGTGA 1368 0.4101 MDFHGFLNDLQDWEFSRKDKARPQKENASSSRITGSVGVEKASKGDTISFDNARNSPGQYDLSRINHLHSSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPNNQEIKKQYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHPISRSTQKSGLAEVHHHKKDNKRQILVKESLLTEDVDGREIKARSWPQSQGDDGSKGGLSASNSLEQRNHRITKPEMKASVQQLASRAASRAMSEAAKNVTPPTTAYQFEVSWRAFSGDLALQARLLKAISPHELPKIFKNALSSTILIEIIKCLASLFTEDMDLVVSYLEHLTKVPRFDVIVMCLSSTNKDDIRKIWDEVFSGEATPIEYAEILDNLQSKFGLGQ* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0762 455 MobiDBLite consensus disorder prediction 17 40 - -
Gso20g0762 455 Pfam Potential Monad-binding region of RPAP3 331 420 IPR025986 -
Gso20g0762 455 ProSiteProfiles TPR repeat profile. 80 113 IPR019734 GO:0005515
Gso20g0762 455 SMART tpr_5 147 180 IPR019734 GO:0005515
Gso20g0762 455 SMART tpr_5 80 113 IPR019734 GO:0005515
Gso20g0762 455 SMART tpr_5 114 146 IPR019734 GO:0005515
Gso20g0762 455 ProSiteProfiles TPR repeat profile. 147 180 IPR019734 GO:0005515
Gso20g0762 455 MobiDBLite consensus disorder prediction 210 252 - -
Gso20g0762 455 PANTHER OS05G0129900 PROTEIN 1 453 - -
Gso20g0762 455 MobiDBLite consensus disorder prediction 277 291 - -
Gso20g0762 455 Gene3D Tetratricopeptide repeat domain 72 178 IPR011990 GO:0005515
Gso20g0762 455 SUPERFAMILY TPR-like 78 194 IPR011990 GO:0005515
Gso20g0762 455 MobiDBLite consensus disorder prediction 271 291 - -
Gso20g0762 455 Pfam Tetratricopeptide repeat 115 143 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0762 Gso-Chr20 37018613 37027064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0762 46 184 Calmodulin-binding Proteins AT3G25230 27.097 6.64e-09 56.2