Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0760 ATGGAGAGCAAAGAGGAGAGGAAGAGGATGCTTCCGTCGCCATCGGAGACCCAACTCAAGGGCCTTGCTATTGTTAGCACCTATGCATGTGCTGACGAGTCTCATGCAGAACAATGTTCCCCGGGTCATGACTCCGAGAGCTTCTATATGAAACTCGCTGAGTTGTTGGAGTCTTCTGGACTGAGTCTCATTTTCAATGTCCGAGAAACTTTGCTGGACTTGTACCTGTTATACTTGGAGGTGACTAGAAGAGGAGGATATCACCAGGTTGGTCGAGAAAAGAAATGGGGTGAAGTAGTCTTTGCCATGAAATTGGAAGGGAATAGTGTAAAGTTATGTGCTCAAGTTGAAAAGCTTTATGCACATCTTCTCTACCAGTTTGAGAAATTGTACTTCTATAGGCATCCTGCAAAGCAAGCTGGATCTATCAGCACCAAAGGTCCACTTCAAAAGAAGCGGAATTCAACAGCTAGTTTATCTCATACAATGAATATTAAAGATGGTCAGATGGTGACAGAGATGTCCAAGGACTACTCTTGCCACATGACAGATTCCAACTTAGCAGGGGCAGGGTATGTGGAACAGCCGGTGTTTTTACCGCCACCCTCGAATGTCAAAGAAATGAAGAAACGCCGAGGTTCTCCACCGGGACGAAAGACTGCATATCAGATATTCCTCAAGCATGAATGTGCTCGATTGAAAACTTGTAGTCAGGCCTTAGATGGCCGGAAAATCCTTCGTTTGGCTATTGATACATGGAGGAATATGTCTGACATTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAGGAAGCAATGAATGGTCACAATAAACAGCAGAGCACCCAAGATACCATAAAGGAGGAGAAGTGGCATAGTCTGAGTGGTGATTATCTTGTAACTTCACAACCTGAGACAGATAACTCCCTTGTCAACAAAGCAGCTGCTGGGTTAGTTCTTAAAATGACTGAAAAAGCACCAACGGATCCTTCATATCTAATGGAGTGGGATGCTTATTGTTCACTGGTTTTGCCAACTAGGGAATCCGAGTAA 1059 0.4429 MESKEERKRMLPSPSETQLKGLAIVSTYACADESHAEQCSPGHDSESFYMKLAELLESSGLSLIFNVRETLLDLYLLYLEVTRRGGYHQVGREKKWGEVVFAMKLEGNSVKLCAQVEKLYAHLLYQFEKLYFYRHPAKQAGSISTKGPLQKKRNSTASLSHTMNIKDGQMVTEMSKDYSCHMTDSNLAGAGYVEQPVFLPPPSNVKEMKKRRGSPPGRKTAYQIFLKHECARLKTCSQALDGRKILRLAIDTWRNMSDIEKQPYVEESKKNKEAMNGHNKQQSTQDTIKEEKWHSLSGDYLVTSQPETDNSLVNKAAAGLVLKMTEKAPTDPSYLMEWDAYCSLVLPTRESE* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0760 352 SMART ARID_2 39 128 - -
Gso20g0760 352 SUPERFAMILY ARID-like 42 134 IPR036431 GO:0003677
Gso20g0760 352 MobiDBLite consensus disorder prediction 270 289 - -
Gso20g0760 352 CDD HMGB-UBF_HMG-box 215 274 - -
Gso20g0760 352 Gene3D - 31 148 IPR036431 GO:0003677
Gso20g0760 352 Pfam ARID/BRIGHT DNA binding domain 45 128 IPR001606 GO:0003677
Gso20g0760 352 Gene3D High mobility group box domain 201 284 IPR036910 -
Gso20g0760 352 SMART bright_3 43 133 IPR001606 GO:0003677
Gso20g0760 352 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 339 - -
Gso20g0760 352 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 1 339 - -
Gso20g0760 352 Pfam HMG-box domain 217 278 IPR009071 -
Gso20g0760 352 ProSiteProfiles ARID domain profile. 42 132 IPR001606 GO:0003677
Gso20g0760 352 SUPERFAMILY HMG-box 198 274 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0760 Gso-Chr20 36947842 36950261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0760 44 273 ARID Transcription Factor Family AT3G13350 23.137 4.76e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso20g0760 ARID 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0760 - - var:108325455 416.001