Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso20g0760 | ATGGAGAGCAAAGAGGAGAGGAAGAGGATGCTTCCGTCGCCATCGGAGACCCAACTCAAGGGCCTTGCTATTGTTAGCACCTATGCATGTGCTGACGAGTCTCATGCAGAACAATGTTCCCCGGGTCATGACTCCGAGAGCTTCTATATGAAACTCGCTGAGTTGTTGGAGTCTTCTGGACTGAGTCTCATTTTCAATGTCCGAGAAACTTTGCTGGACTTGTACCTGTTATACTTGGAGGTGACTAGAAGAGGAGGATATCACCAGGTTGGTCGAGAAAAGAAATGGGGTGAAGTAGTCTTTGCCATGAAATTGGAAGGGAATAGTGTAAAGTTATGTGCTCAAGTTGAAAAGCTTTATGCACATCTTCTCTACCAGTTTGAGAAATTGTACTTCTATAGGCATCCTGCAAAGCAAGCTGGATCTATCAGCACCAAAGGTCCACTTCAAAAGAAGCGGAATTCAACAGCTAGTTTATCTCATACAATGAATATTAAAGATGGTCAGATGGTGACAGAGATGTCCAAGGACTACTCTTGCCACATGACAGATTCCAACTTAGCAGGGGCAGGGTATGTGGAACAGCCGGTGTTTTTACCGCCACCCTCGAATGTCAAAGAAATGAAGAAACGCCGAGGTTCTCCACCGGGACGAAAGACTGCATATCAGATATTCCTCAAGCATGAATGTGCTCGATTGAAAACTTGTAGTCAGGCCTTAGATGGCCGGAAAATCCTTCGTTTGGCTATTGATACATGGAGGAATATGTCTGACATTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAGGAAGCAATGAATGGTCACAATAAACAGCAGAGCACCCAAGATACCATAAAGGAGGAGAAGTGGCATAGTCTGAGTGGTGATTATCTTGTAACTTCACAACCTGAGACAGATAACTCCCTTGTCAACAAAGCAGCTGCTGGGTTAGTTCTTAAAATGACTGAAAAAGCACCAACGGATCCTTCATATCTAATGGAGTGGGATGCTTATTGTTCACTGGTTTTGCCAACTAGGGAATCCGAGTAA | 1059 | 0.4429 | MESKEERKRMLPSPSETQLKGLAIVSTYACADESHAEQCSPGHDSESFYMKLAELLESSGLSLIFNVRETLLDLYLLYLEVTRRGGYHQVGREKKWGEVVFAMKLEGNSVKLCAQVEKLYAHLLYQFEKLYFYRHPAKQAGSISTKGPLQKKRNSTASLSHTMNIKDGQMVTEMSKDYSCHMTDSNLAGAGYVEQPVFLPPPSNVKEMKKRRGSPPGRKTAYQIFLKHECARLKTCSQALDGRKILRLAIDTWRNMSDIEKQPYVEESKKNKEAMNGHNKQQSTQDTIKEEKWHSLSGDYLVTSQPETDNSLVNKAAAGLVLKMTEKAPTDPSYLMEWDAYCSLVLPTRESE* | 353 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso20g0760 | 352 | SMART | ARID_2 | 39 | 128 | - | - | |
Gso20g0760 | 352 | SUPERFAMILY | ARID-like | 42 | 134 | IPR036431 | GO:0003677 | |
Gso20g0760 | 352 | MobiDBLite | consensus disorder prediction | 270 | 289 | - | - | |
Gso20g0760 | 352 | CDD | HMGB-UBF_HMG-box | 215 | 274 | - | - | |
Gso20g0760 | 352 | Gene3D | - | 31 | 148 | IPR036431 | GO:0003677 | |
Gso20g0760 | 352 | Pfam | ARID/BRIGHT DNA binding domain | 45 | 128 | IPR001606 | GO:0003677 | |
Gso20g0760 | 352 | Gene3D | High mobility group box domain | 201 | 284 | IPR036910 | - | |
Gso20g0760 | 352 | SMART | bright_3 | 43 | 133 | IPR001606 | GO:0003677 | |
Gso20g0760 | 352 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 1 | 339 | - | - | |
Gso20g0760 | 352 | PANTHER | HMG (HIGH MOBILITY GROUP) BOX PROTEIN | 1 | 339 | - | - | |
Gso20g0760 | 352 | Pfam | HMG-box domain | 217 | 278 | IPR009071 | - | |
Gso20g0760 | 352 | ProSiteProfiles | ARID domain profile. | 42 | 132 | IPR001606 | GO:0003677 | |
Gso20g0760 | 352 | SUPERFAMILY | HMG-box | 198 | 274 | IPR036910 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso20g0760 | Gso-Chr20 | 36947842 | 36950261 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso20g0760 | 44 | 273 | ARID Transcription Factor Family | AT3G13350 | 23.137 | 4.76e-10 | 58.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | ARID | Gso20g0760 | ARID | 1.9e-11 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso20g0760 | - | - | var:108325455 | 416.001 |