Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0740 ATGACATCGGTTGGTGTGGCACCAACTTCGGGTTTGAGAGAAGCCAGTGGGCATGGAGCAGCAGCTGCGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACAGTTGTTGATGGCAACGGAACAGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAGACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGATAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCAAATGTTGTCGCTTTGAAGCACTGTTTCTTTTCAACCACTGAAAAGGATGAACTATACCTCAATTTGGTACTTGAATATGTTCCTGAAACAGTTAATCGTGTGATCAAACATTACAACAAGTTAAACCAAAGGATGCCGCTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCGTTATCTTATATTCATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCACCTGAGCTCATATTTGGCGCAACTGAATATACTTCAGCCATTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGCCTCTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTTTTGATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGCGATCCAAATACTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATGCAAGGAAGCAATGCCCGTTTCTAGGCTCGTGA 1233 0.438 MTSVGVAPTSGLREASGHGAAAADRLPEEMNDMKIRDDREMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTSAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTAFDALTHPFFDELRDPNTRLPNGRFLPPLFNFKSHELKGVPSEILVKLVPEHARKQCPFLGS* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0740 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Gso20g0740 410 Pfam Protein kinase domain 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0740 410 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Gso20g0740 410 ProSiteProfiles Protein kinase domain profile. 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0740 410 Gene3D Transferase(Phosphotransferase) domain 1 154 402 - -
Gso20g0740 410 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 408 - -
Gso20g0740 410 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
Gso20g0740 410 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 408 - -
Gso20g0740 410 SMART serkin_6 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0740 410 CDD STKc_GSK3 69 361 IPR039192 -
Gso20g0740 410 SUPERFAMILY Protein kinase-like (PK-like) 73 384 IPR011009 -
Gso20g0740 410 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0740 Gso-Chr20 36710626 36715114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0740 80 386 MAP Kinase Gene Family AT2G43790 34.796 3.75e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gso20g0740 Pkinase 5.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0740 K00924 - gmx:100798867 842.417