Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0724 ATGCCTTTGTATGAGTTATACCGGCTGGCCAGAGAGAAGCTTGGTAAAGAAACTACCAGCACACGTGCACCTGATCTATGTTCCTCGCCTGAGAATGATTTTTTTGAGCTAGTTTGGGAGAACGGTCAGATTTCAAGCCAGGGTCAGTCCAGTAGAGTTAGAAGGAGCCCCTCTTGCAAGAGTTTGCCATCTCACTGCTTACCATCTCACTGTCCCAAGGTCAGGGATAAAGATGTAGGATATGGTACCAACACAAGGATGGGAAAATTTGGGGATTTAGACTCTGGATTGAATGAAATTCCAATGTCGGTGCCATCCCGTGAAGTGGATTTCTGTCATGATGAAGATGTGTTACCTTGGTTGGATTATACATCAATGGATGGTTCCTTGCAACATGAATATGGTTCTGATTTCCTACATGCCTCAAACAGTTTTACTCTATTGGATAAAAAAAGTAATGGCAATATGGCGTTTAGGGATTCTCATAAAACTTCGGAAGAACAAGGGAATGTTTTCAAGGGTTCTTCAGCTGAACAGGTTGAGACTGCCAGACCTAAAGCTAGCACCAGTCAGTTATTCCCCCCATCATTGCATCAGTGTCAAACATCTTTTGTTTCTTCTAGATCAAGAGCATCGGATATAACTGAAAATAACAATACGAGTAATGCAAACCAGGATGTGTCTTATGGTGAAATTACTCATATTCTATCTTCCTCAAGTGATTTGTCTAGTGCAAAGGTGCAGAAGTGTGATCCACCTATTACTAGCAATGGTTCCAGTTCCACCATAATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTATGGTAAGAGCTAATCTTCAGAACATTGGCCTGAAGTCTGGTTTGTCTTCAGCAAGATCAGATAGTATGGAAATTAAGAATAAAGGTGCTGCTGCAACTAGCAGCAATCCTCCTGAATCAATTCTTGTTGATTCAAGTGGTGAATGTTCGAAGGAACCGACCATGCAATGCCAGCAGGTTGTGGAGCAATCCAAGCCTGATGTGAACTCTTTGCAGCCAAAATCTGTTGAACAGAATGCTGTGCCTTCTAAGCAGTCAGAGCCTGCTAGTAAAGAGAGTGCCACAAAGATTGATCAAACTCCCAACCAAGTTCTTGGCGACAGTGGCACTAAAGGACAGACAGCTGCTGAAAAAAGTATGGAGCCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCACTGGTGCAGACCAAGGTTCAGACGAGCCAAATCAAAATTTGAAGCGAAAAACAAAAGACACCGACGACTCTGAGTGCCATAGTGAAGATGTTGAGGAAGAATCAGCTGGTGCTAAAAAGACAGCTGGTGGGCAAGGAGGTGCAGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCAGGAATGCAGCACATGCATGCACCACATATGGCTCCATTTTCACCTATGGGTGTTGGCATGCATATGGGATATGGTATGGGTTATGGGATGGGAATGCCTGACATGAATGGTGGATCTTCAAGATTCCCTATGATTCAGGTGCCCCAAATGCAAGGAACTCATATCCCTGTTGCGCACATGTCTGGACCTACTGCTTTACATGGGATGGCCAGATCAAATCCTCCAGGATATGGGCTTCCTGGACAAGGCTATCCCATGCATATGCCGCCAGCTTCCGTGTTTCCTTTTTCAGGAGGACCTCTCATGAATTCACCAGCTCAGGGACTACATGCCCGTGGATCATCAGGACTTGTTGAAACTGTGGATTCAGCTTCTGCGTCTGGCTTAAAGGATCAAATGCAAAATGTTGACCCACAAGTTAAGCAAAGTACTGGTGGCTGTGACTCGACAAGTCAGATGCCTACCCAGTGTGAAGCAGCAGCTGTAGGATTTGAGCAATCTGCTTTGGCTCATAGTAGAGGTCATGCATCCAAGGCTAATGACAATGGAGCTGTTAATCCTGATCCTGGCAGATAA 2169 0.4458 MPLYELYRLAREKLGKETTSTRAPDLCSSPENDFFELVWENGQISSQGQSSRVRRSPSCKSLPSHCLPSHCPKVRDKDVGYGTNTRMGKFGDLDSGLNEIPMSVPSREVDFCHDEDVLPWLDYTSMDGSLQHEYGSDFLHASNSFTLLDKKSNGNMAFRDSHKTSEEQGNVFKGSSAEQVETARPKASTSQLFPPSLHQCQTSFVSSRSRASDITENNNTSNANQDVSYGEITHILSSSSDLSSAKVQKCDPPITSNGSSSTIMNFSHFARPAAMVRANLQNIGLKSGLSSARSDSMEIKNKGAAATSSNPPESILVDSSGECSKEPTMQCQQVVEQSKPDVNSLQPKSVEQNAVPSKQSEPASKESATKIDQTPNQVLGDSGTKGQTAAEKSMEPAVASSSVCSGTGADQGSDEPNQNLKRKTKDTDDSECHSEDVEEESAGAKKTAGGQGGAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAPHMAPFSPMGVGMHMGYGMGYGMGMPDMNGGSSRFPMIQVPQMQGTHIPVAHMSGPTALHGMARSNPPGYGLPGQGYPMHMPPASVFPFSGGPLMNSPAQGLHARGSSGLVETVDSASASGLKDQMQNVDPQVKQSTGGCDSTSQMPTQCEAAAVGFEQSALAHSRGHASKANDNGAVNPDPGR* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0724 722 MobiDBLite consensus disorder prediction 657 684 - -
Gso20g0724 722 PANTHER TRANSCRIPTION FACTOR PIF3 1 685 IPR044273 GO:0003700|GO:0006355
Gso20g0724 722 MobiDBLite consensus disorder prediction 416 443 - -
Gso20g0724 722 MobiDBLite consensus disorder prediction 289 415 - -
Gso20g0724 722 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 460 509 IPR011598 GO:0046983
Gso20g0724 722 MobiDBLite consensus disorder prediction 168 192 - -
Gso20g0724 722 Gene3D - 455 518 IPR036638 GO:0046983
Gso20g0724 722 MobiDBLite consensus disorder prediction 157 192 - -
Gso20g0724 722 PANTHER TRANSCRIPTION FACTOR PIF3 1 685 - -
Gso20g0724 722 MobiDBLite consensus disorder prediction 698 722 - -
Gso20g0724 722 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 457 520 IPR036638 GO:0046983
Gso20g0724 722 SMART finulus 466 515 IPR011598 GO:0046983
Gso20g0724 722 Pfam Helix-loop-helix DNA-binding domain 464 510 IPR011598 GO:0046983
Gso20g0724 722 CDD bHLH_AtPIF_like 460 522 - -
Gso20g0724 722 MobiDBLite consensus disorder prediction 289 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0724 Gso-Chr20 36485793 36490763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0724 1 589 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 38.564 4.95e-78 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso20g0724 HLH 7.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0724 K12126 - gmx:100794974 1388.24