Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0720 ATGGGAAGACACTCTTGTTGCTACAAACAGAAGTTACGGAAAGGCCTTTGGTCTCCAGAGGAAGACGAGAAGCTGCTGAATTACATCACCAAACATGGTCATGGATGTTGGAGCTCGGTTCCCAAACTAGCTGGTTTGCAGAGATGTGGCAAGAGCTGCAGGTTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAACAGGAAGAAAACATGATTGTTGAACTTCATGCAGTTCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCAGGAAGAACAGACAATGAGATTAAGAACCTATGGAACTCTTGCCTGAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCAAACACCCACAAGCCACTCTCTGAGGTTGAGAACGAAAAGGACATGATGCCACCCTCAACCGACAAAAGCACTCAGAAAGCGTCTGTGGGATCCAATGAAGTGAGTCTGGTTGATCATCACCAGCAACAACCAAAAATCATGCCTAATTCATCATCAGAGAGATACCCTCTTGAAGTTTCCACAACTAGTTCCACCCAGGAACTGTTCCTAGATAGGTTTGGTACCCCCACCACCTGCCACCACCACCACCACAACAACAACACTTCTGATGTTGTAGGATCATACTTCTCCTTCCAGCACTTGAACTATGGAACAACAACAAACATGTCCCTCTCTGCAAACCCCAACGCCTCTCTTTGTTTTGTTCCAGCCTCCACTTCTTCAGACCTTAATAACAATTCCACCATAACCTCCTCCATGCTCCCTTCAATTTTCCCAACACAACACGTGAAGCTCCAATCTAATAACAACAACCCTTCCATTTCGTCTGATGGGGTTCAAAACTGGGAAACAAGTAACTTAAATAACAGCAACAGCACAAACAAAAACAATGGGAGTATGCAGTTACAAAGCTGCACAAACTTCATTGACAACACGTGGGGGGTGGGAGAGTCTATGAAGGTTGTTAACATCAACAAAGATGCTGATCAAATGCCTCTACAAGCAGAACAAGAAGATCTGAAATGGTCTGAGTATCTTAATACCCCGTTTATTCTGGGAAACAACACAGCGCAGAATCATCAAATTCAAACCTCTCAATCTATCTATAGTGAGGTTAAACCAGAAACAGGTTTCATAACAGACGAGTCATGTGCTACATGGCACCATTATCAGAATCAGACACCAGCTTTTCAACTTTCCGATATATATAGCAAGGATCTGCAGAGATTTTCAGTGACTTTCGGACAAACCCTGTAA 1287 0.4398 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENMIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENEKDMMPPSTDKSTQKASVGSNEVSLVDHHQQQPKIMPNSSSERYPLEVSTTSSTQELFLDRFGTPTTCHHHHHNNNTSDVVGSYFSFQHLNYGTTTNMSLSANPNASLCFVPASTSSDLNNNSTITSSMLPSIFPTQHVKLQSNNNNPSISSDGVQNWETSNLNNSNSTNKNNGSMQLQSCTNFIDNTWGVGESMKVVNINKDADQMPLQAEQEDLKWSEYLNTPFILGNNTAQNHQIQTSQSIYSEVKPETGFITDESCATWHHYQNQTPAFQLSDIYSKDLQRFSVTFGQTL* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0720 428 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso20g0720 428 PANTHER MYB DOMAIN PROTEIN 55 1 421 - -
Gso20g0720 428 CDD SANT 17 61 IPR001005 -
Gso20g0720 428 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso20g0720 428 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso20g0720 428 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso20g0720 428 SMART sant 13 63 IPR001005 -
Gso20g0720 428 SMART sant 66 114 IPR001005 -
Gso20g0720 428 MobiDBLite consensus disorder prediction 120 142 - -
Gso20g0720 428 MobiDBLite consensus disorder prediction 120 179 - -
Gso20g0720 428 MobiDBLite consensus disorder prediction 143 179 - -
Gso20g0720 428 CDD SANT 69 109 IPR001005 -
Gso20g0720 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gso20g0720 428 PANTHER HOMEODOMAIN-RELATED 1 421 - -
Gso20g0720 428 Gene3D - 11 67 - -
Gso20g0720 428 Gene3D - 68 141 - -
Gso20g0720 428 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso20g0720 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0720 Gso-Chr20 36395190 36397448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0720 1 428 MYB Transcription Factor Family AT1G09540 48.046 5.08e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso20g0720 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0720 K09422 - gmx:778072 855.514