Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0714 ATGTTGATTACTGAGGAGTGCGCGGGAAGCCTTTGGTTCTCTCTCATTTCTCGTTCTTCTTCTGCCGTCATACTCACACCACTCTTCTTCCATTTTCATTTTCTCTGCGAATTCCTATTCCCATACACAAACCAAATGGGTATTAAGGGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAACAAATTCGAGAGCTACTTCGGTCGCAAGATCGCCATTGACGCTAGCATGAGCATTTACCAGTTCCTTATTGTTGTGGGAAGAAGCGGAACTGAAATGCTCACTAATGAGGCTGGTGAAGTTACCAGTCATTTGCAAGGGATGTTTTCGCGGACAATCAGACTTCTAGAAGCTGGGATAAAACCAGTATATGTTTTTGATGGGAAGCCACCAGATTTGAAGAAACAAGAGCTGGCCAAACGTTACTCCAAGAGAGCTGAGGCTACTGAAGATTTGTCAGAAGCCTTAGAGACTGCCAATAAGGAAGACATTGAAAAATTCAGTAAACGTACAGTGAAGGTGACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCTGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAGTGTGCTGCCCTTTGCAAAGCTGGAAAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTAACATTTGGATCTCCTAAATTTCTTCGCCACCTAATGGATCCAAGCTCAAAAAAAATTCCAGTGATGGAATTCGAAGTTGCAAAGATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGGGATTGGGGGACTGACAGCTTTGAAACTCATACGTCAACATGGCTCTATTGAAAATATACTGGAGAACCTAAACAAAGAGAGGTACCAGATACCAGATAATTGGCCATATCAGGAGGCTCGGCGGCTTTTTAAAGAACCAATGGTCATAACTGATGAAAAGGAACTTGATATTAAGTGGTCTTCTCCAGATGAAGAAGGGTTAATAACATTTCTGGTTAATGAGAATGGTTTCAACAGTGATAGAGTGACTAAGGCAATAGAAAAAATTAAAGCGGCAAAGAACAAGTCATCACAAGGCCGATTGGAATCATTTTTTAAGCCAACAGTAAATCCATCTGTACCTATCAAACGCAAGGAAACACCAGTGAATAATGCTAAAGAAACTAACAAAAAGACCAAGGCTGGTGGTGGTAAGAAGAAGAAATAG 1284 0.419 MLITEECAGSLWFSLISRSSSAVILTPLFFHFHFLCEFLFPYTNQMGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGSPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGSIENILENLNKERYQIPDNWPYQEARRLFKEPMVITDEKELDIKWSSPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTVNPSVPIKRKETPVNNAKETNKKTKAGGGKKKK* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0714 427 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 46 417 IPR006084 -
Gso20g0714 427 SMART 53exo3 74 351 IPR002421 GO:0003677
Gso20g0714 427 PANTHER FLAP ENDONUCLEASE 1 46 417 - -
Gso20g0714 427 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 264 396 IPR036279 -
Gso20g0714 427 SMART HhH_4 266 299 IPR008918 GO:0003677|GO:0003824
Gso20g0714 427 Hamap Flap endonuclease 1 [fen]. 46 392 IPR023426 GO:0016788
Gso20g0714 427 Gene3D - 268 331 - -
Gso20g0714 427 SMART xpgn3 46 153 IPR006085 GO:0004518
Gso20g0714 427 SUPERFAMILY PIN domain-like 47 279 IPR029060 -
Gso20g0714 427 Pfam XPG I-region 195 279 IPR006086 GO:0004518
Gso20g0714 427 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 87 IPR006084 -
Gso20g0714 427 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 146 IPR006084 -
Gso20g0714 427 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 191 208 IPR006084 -
Gso20g0714 427 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 212 232 IPR006084 -
Gso20g0714 427 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 269 284 IPR006084 -
Gso20g0714 427 Coils Coil 144 164 - -
Gso20g0714 427 CDD H3TH_FEN1-Euk 267 335 - -
Gso20g0714 427 Pfam XPG N-terminal domain 46 153 IPR006085 GO:0004518
Gso20g0714 427 SMART xpgineu 192 264 IPR006086 GO:0004518
Gso20g0714 427 MobiDBLite consensus disorder prediction 381 427 - -
Gso20g0714 427 ProSitePatterns XPG protein signature 1. 125 139 IPR019974 GO:0016788
Gso20g0714 427 CDD PIN_FEN1 49 377 - -
Gso20g0714 427 ProSitePatterns XPG protein signature 2. 195 209 IPR019974 GO:0016788
Gso20g0714 427 Gene3D - 55 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0714 Gso-Chr20 36290636 36296328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0714 46 406 Core DNA Replication Machinery Family AT5G26680 88.089 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0714 K04799 - gmx:100792878 707.983