Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0706 ATGGCTTCCACCGTAGGTATCTCTTCTTCCATCTCCATATGCAAAAACCCCTCTTTTCAACTCCTCAGAAGACCAACCGCCACAACCACCTCTGTTTTCTTCAACACCCTTCCCCGTAACCGTAACGCCACACTCTCTTCCCTTCCTTCCGCCATTGCCACCCCCACCTCATCCATTCTCACAGAACAACCCTTCAAGGGTTTAACTTTAGACGACGCTAGTAATAGCAACCAATTTGGCTATGACTACGAACCTGACACCAATGTGAGCGACCACGAACTCGACATTTCCAAGTTGGGTTTACCTTCGCCCCTCGTTCACTCCCTACAACAACGTGGGATCACCAGTCTTTTCCCCATTCAGAGAGCTGTGTTAGTGCCTGCACTAGAAGGTAAAGATATCATTGCTCGTGCAAAGACCGGAACTGGCAAGACATTAGCATTCGGAATTCCAATTCTTAAGGGCCTCACTGATGATGATGAACAAAGTTCTCACAGGAGGTCTGGGAGGCTTCCTAAAGCATTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTCGAGAAAGAGATACAAGAATCTGCACCTTATCTCAAAACAGTTTGTGTTTATGGTGGTGTTTCTTATGTAACACAGCAGGGTGCGCTTTCCCACGGTGTTGATGTGGTGGTTGGAACGCCGGGTAGGATAATTGACCTGGTGAATGGAAACAGCCTTAAACTGAGTGAGGTTCAGTATTTGGTGCTTGATGAAGCTGATCGGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAGGTCATTTTAGATAAGGTCCCAGCTCAGCGCCAGACCATACTTTTTTCTGCGACCATGCCTGGTTGGGTGAAGAAACTGTCAAGAAAGTATTTGAATAACCCTTTGACGATTGATTTGGTTGGTGAACAAGAAGAGAAGCTTGCTGAAGGGATCAAACTTTATGCTTTATCAGCGACTGCCACTTCAAAACGGACAGTTCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGGAAGACTATTGTTTTTACGCAGAAAAAAAAGGATGCTGATGAAGTATCAATGGCATTAACAAGTAGTATAGCTTCCGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGTCGTACTGGGCGTGCAGGAAAAGAGGGTACTGCCATTCTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGCTGCAAATTTGAATTTGTTAGTCCACCAGCTATGGAAGAGATCTTGGAGTCATCTGCTGAGCAAGTTGTTGCTACACTTAATAGAGTTCATCCTGAGTCTGTTGATTTTTTCATTGCAACTGCACAAAAACTGGTTGAAGAACAAGGTGCAAGGGCCCTTGCAGCTGCTCTAGCACAGATGAGTGGATTCTCTCAACCTCCTTCTTGCCGGTCTCTTATCAATCATGAACAGGGATGGACTACATTGCAACTGACTCGAGATCCAGATACTTCTGCAAGATATTTTTCTGCAAGATCTGTCACTGGGTTTCTTTCAGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAGAGGGTTCAAGGAGCTGTTTTTGATCTTCCAGAGGAAATAGCTAAAGAGTTACTCACTAAGGATCTGCCATCTGGAAACACTATTTCCAAAATCACTAAGTTACCTCCTTTGCAAGATGATGAACCTGCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGATCGAAGTAACCGAAGAGGTTCTAGGGATCAGAGAGGTTTTAGAAGTTCACGAGGATGGGAAGGAGGCCAAGACTCTGATGATGAGTTTGGACAAGGTGGTAGAAGTTTCAGATCTGGCAACAAGTTTCGAATGGGTAAAAGCAGCGGGGATGACTGGCTAATTGGAGGCAGTAGTAGATCAAGCAGGTTTTCATCATCCAACAGAAGCGGCGGGCATGGAGGGGCCTGCTTTAATTGTGGAAAACCTGGCCATCGGGCATCAGATTGTACCACCAAAAAACGAGTCTTTTTCTAG 2211 0.4487 MASTVGISSSISICKNPSFQLLRRPTATTTSVFFNTLPRNRNATLSSLPSAIATPTSSILTEQPFKGLTLDDASNSNQFGYDYEPDTNVSDHELDISKLGLPSPLVHSLQQRGITSLFPIQRAVLVPALEGKDIIARAKTGTGKTLAFGIPILKGLTDDDEQSSHRRSGRLPKALVLAPTRELAKQVEKEIQESAPYLKTVCVYGGVSYVTQQGALSHGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADRMLAVGFEEDVEVILDKVPAQRQTILFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAEGIKLYALSATATSKRTVLSDLITVYAKGGKTIVFTQKKKDADEVSMALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFVSPPAMEEILESSAEQVVATLNRVHPESVDFFIATAQKLVEEQGARALAAALAQMSGFSQPPSCRSLINHEQGWTTLQLTRDPDTSARYFSARSVTGFLSDVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLTKDLPSGNTISKITKLPPLQDDEPASDFYGKFSDRDRSNRRGSRDQRGFRSSRGWEGGQDSDDEFGQGGRSFRSGNKFRMGKSSGDDWLIGGSSRSSRFSSSNRSGGHGGACFNCGKPGHRASDCTTKKRVFF* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0706 736 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 8 726 - -
Gso20g0706 736 Gene3D - 706 734 - -
Gso20g0706 736 MobiDBLite consensus disorder prediction 692 711 - -
Gso20g0706 736 SUPERFAMILY Retrovirus zinc finger-like domains 696 733 IPR036875 GO:0003676|GO:0008270
Gso20g0706 736 Pfam DEAD/DEAH box helicase 118 291 IPR011545 GO:0003676|GO:0005524
Gso20g0706 736 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 248 256 IPR000629 -
Gso20g0706 736 SMART helicmild6 356 436 IPR001650 -
Gso20g0706 736 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 302 IPR014001 -
Gso20g0706 736 PANTHER - 8 726 - -
Gso20g0706 736 MobiDBLite consensus disorder prediction 613 716 - -
Gso20g0706 736 CDD DEADc 105 303 - -
Gso20g0706 736 SMART ultradead3 113 319 IPR014001 -
Gso20g0706 736 CDD GUCT_Hera 531 610 - -
Gso20g0706 736 SMART c2hcfinal6 714 730 IPR001878 GO:0003676|GO:0008270
Gso20g0706 736 CDD SF2_C_DEAD 328 445 - -
Gso20g0706 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 457 IPR027417 -
Gso20g0706 736 Pfam Zinc knuckle 714 729 IPR001878 GO:0003676|GO:0008270
Gso20g0706 736 Pfam GUCT (NUC152) domain 523 623 IPR012562 GO:0003723|GO:0004386|GO:0005524
Gso20g0706 736 Gene3D - 319 524 IPR027417 -
Gso20g0706 736 Pfam Helicase conserved C-terminal domain 330 436 IPR001650 -
Gso20g0706 736 MobiDBLite consensus disorder prediction 630 663 - -
Gso20g0706 736 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 476 IPR001650 -
Gso20g0706 736 Gene3D - 95 306 IPR027417 -
Gso20g0706 736 ProSiteProfiles Zinc finger CCHC-type profile. 715 728 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0706 Gso-Chr20 36171345 36177262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0706 96 458 Eukaryotic Initiation Factors Gene Family AT1G72730 36.240 7.05e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0706 - - gmx:100815040 1400.19