Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0692 ATGTCTATGGCGGAAGAAGAACCTTCCATAACATCGCCACCGGCAAGAACGTTACACAAGTTCCTCTCCCGCAACGGCAAGACCGTCATCGCCGCGCAACCTCTGGCGGTGGTTCGCGCCACCACCAGCACCGGCGGCGCGCGCGTTCTCGCCGCGCCGCCGAACTCGAACGATGATCCAACACCACCGCAGGAAGAAGAAGGAGAAGGCGAAACCGGCTTCGATGCTTCTCATCATCATGAACGGATATTGTTGCAGAGAGAGCTAACGGTTTCGTTCGACGAGTTTCTCGAGGTCACCAACACGAAGGTCGCCACCGAAGAGGAGGCTCTGAAATCAGTGATGGCGCCGTTGGAAGAAGAAACTGAAGAAGGAGAGGAAGCCGAATCGTCACAGGCTCAATCAGCGCAACCGGTTCAACCGGTGCCGAGGGGACCGCAACTGTTTCGACCGGTGCAGAAGAAGAAAGCGGTTACCGGTGATGACGTGGAGGTGGTGGAGGTGCGGAAGCCTGTGGAAAAGAAGAACATTCCGAATATTTCGAATCTCGAGGACGGTGAGTTTCCGGAGGAGTCTGGGTGGTTCCTTCTCGGGAGGAAGGTTGAGGTCGCAGTTTCGACGGCCAGGGGAGTGAACAGGTTGGTGGATAATGAAATCGTTCATTTCAATTTTCCTATTCCGAGTTACTCGAGTAAGTCTCAGTGGATCGTTCGAGCGTCAACCAAGCGTTCTGGAGAGGTTGGGAGGATGCCAATGGAATGGGCAAAGGCTGTGATTCCGGTTATGCAATCTGGAAGGGTTAAGGTTCGAGGCCGGTGCATTGCTGTGCCAGATAAACTACAAATGATGCAAGAGATTATGTTTTTAGTGAGCTTTTATGTTCACCACTCTGTATTTGCTGAGCGTGTTGATACTTCTTGGAGGCTGGAGGCTTGTGGTAAAATTGATGATACTGTTTATCCACTTCTTGCCCTATTAAAAATGCTAGAGATCAAGCCAAGTCAAAAGGCTGTATTCACTCCTGAGGATATAGATTCCCGGAAGCGGTTGCTCTATCCAAAGGCTGATCCAGATGAAGCTGCAGCATTGCCTTTGATCAAGCGAAGAAAGGGCGGTGAGCCCCTTCCTGAGCAAAATAATGATGAACAAGCTCTTTCAGAGTCAGCTTTGAATAAACTTGTTGGAGCGGCAGAAATCTATGACCTCAAGGAGAAGGAAGCCCCAGAGACACTTGTGTGTAATTTAAAGCCTTACCAGAAGCAGGCTTTACACTGGATGACTGAAATAGAGAAAGGGATGGATATTGAGAGTGTAGAAAGAAATCTGCATCCCTGCTGGTCAGCCTACACTATATGCAAGGGAAGGACAATTTATTTGAATATTTTTACTGGAGAGGCCTCTAAAAAATTTCCAAAAGCAACGCAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACTGTTATGACAATTGCTTTGATACTCAGTAACCCAGGCAGGGGTAACTCAGAAAACAATGATGTGGAGAATGGAGATGATAATTTTATCACAAATAAAAGAAAGAATGCTAATACCTTACATAAATTTGAGGGTGGCACTCTTATTGTTTGTCCCATGGCTTTGTTAAGTCAATGGAAGGATGAGCTTGAAACACATTCAAAGGAAGGTAGTATATCCATATTTGTTCATTATGGTGGAGCAAGAACCACTGATCCCTGGATGATCTCAGGCCATGATGTTGTCTTGACAACGTATGGTGTCCTACAAGCTGCATACAAAAATGATGGAGAGAATAGCATCTACAACAAGGTCAAGTGGTACAGGGTGGTGCTAGATGAAGCTCATAATATAAAAGCCCATCGGAATCAGACTGCCCAGTCTGCTTTTGTTCTGTCCTCACACAGCCGCTGGTGTTTAACTGGAACCCCACTTCAGAATAGCTTGGAAGACCTATACAGTCTCTTGCGTTTCTTGCGTGTTGAACCTTGGTGTAACTTGGCATGGTGGCAGAAGTTGATTCAAAGGCCTTATGAGAATGGTGATCCAAGATCCCTGAAGTTGGTCAAGGCCATTTTGAGGATGCTGATGTTAAGAAGAACAAAGGAAACGAAGGATAAGAAAGGAAGGCCGATACTTTTCCTGCCTCCAATTGATTTTCAGTTGATTGAGTGTGAACAATCAGAATCTGAACGGGACTTTTATGAAGCCCTGTTTGAGAGATCTAAAGTTCAATTTGATCAGTATGTCGCACAAGGAAAGGTTCTTCACCATTATGCAAATATCCTTGACCTACTAATGCAGTTGAGGCGGTGTTGTAACCATCCATTTTTAGTTATGTGCGGAAGCGATACCCAGAAACGTGCAGATTTAAGCAGACTCGCAAGAAAATTCTTTCAGACTAATACTGAATTCCCCGATGAAAGCAATCAAAATGATCCACGGCAGCAAGCAGAGTTGAACAAACTTGCAAGTAGATTACTTCTAAAATCTGCTTCTTCTTTGCACTCGGTTCAACCTCATGCATACATTGCCGAGGTTTTGGAGAATATTCAAAAGGGTGACATCATAGAATGCTCTATATGTATGGAATCTCCAGAAGATCCTGTGTTTACACCATGTGCGCATAAGTTTTGTAGAGAATGTCTATTTAGTTGCTGGGGCACCTCAGTGGGTGGCAAATGTCCAATCTGTCGTCAATTGCTCCAGAAAGACGATCTGATTACTTATTCATCTGAAAGCCCATTCAAGGTCGATATTAAGAACAATGTGACAGAGTCTTCAAAGGTTTCGAAGCTATTTGAATTCCTGCAACGTATTCTGAACACATCAAGTGAAAAGAGTATCGTCTTCAGTCAGTGGACATCATTTTTTGATCTGTTGGAGAATCCATTGAGGAGGAGAGGAATTGGTTTTTTGAGATATGATGGGAAGTTGACTCAGAAGCAGAGGGAGAAAGTTCTGGATGAATTCAATGAGACAAGAGAGAAAAGGGTTTTGTTAATGTCACTAAAAGCTGGTGGTGTGGGTTTGAACTTAACTGCAGCCTCAAATGTTTTCATTATGGATCCATGGTGGAACCCTGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGCATAGGACAAAACCGAAGAGTTGTAGTGAGAAGATTCATCGTTAAGGACACAGTGGAAGATCGATTGCAACAAGTTCAAGCTAGGAAACAAAGGATGATATCTGGTACCCTCACCGACGATGAGGTTCGGACTGCTAGGATTCAAGACCTCAAAATGCTTTTCACATGA 3297 0.4492 MSMAEEEPSITSPPARTLHKFLSRNGKTVIAAQPLAVVRATTSTGGARVLAAPPNSNDDPTPPQEEEGEGETGFDASHHHERILLQRELTVSFDEFLEVTNTKVATEEEALKSVMAPLEEETEEGEEAESSQAQSAQPVQPVPRGPQLFRPVQKKKAVTGDDVEVVEVRKPVEKKNIPNISNLEDGEFPEESGWFLLGRKVEVAVSTARGVNRLVDNEIVHFNFPIPSYSSKSQWIVRASTKRSGEVGRMPMEWAKAVIPVMQSGRVKVRGRCIAVPDKLQMMQEIMFLVSFYVHHSVFAERVDTSWRLEACGKIDDTVYPLLALLKMLEIKPSQKAVFTPEDIDSRKRLLYPKADPDEAAALPLIKRRKGGEPLPEQNNDEQALSESALNKLVGAAEIYDLKEKEAPETLVCNLKPYQKQALHWMTEIEKGMDIESVERNLHPCWSAYTICKGRTIYLNIFTGEASKKFPKATQMARGGILADAMGLGKTVMTIALILSNPGRGNSENNDVENGDDNFITNKRKNANTLHKFEGGTLIVCPMALLSQWKDELETHSKEGSISIFVHYGGARTTDPWMISGHDVVLTTYGVLQAAYKNDGENSIYNKVKWYRVVLDEAHNIKAHRNQTAQSAFVLSSHSRWCLTGTPLQNSLEDLYSLLRFLRVEPWCNLAWWQKLIQRPYENGDPRSLKLVKAILRMLMLRRTKETKDKKGRPILFLPPIDFQLIECEQSESERDFYEALFERSKVQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMCGSDTQKRADLSRLARKFFQTNTEFPDESNQNDPRQQAELNKLASRLLLKSASSLHSVQPHAYIAEVLENIQKGDIIECSICMESPEDPVFTPCAHKFCRECLFSCWGTSVGGKCPICRQLLQKDDLITYSSESPFKVDIKNNVTESSKVSKLFEFLQRILNTSSEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKQREKVLDEFNETREKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQNRRVVVRRFIVKDTVEDRLQQVQARKQRMISGTLTDDEVRTARIQDLKMLFT* 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0692 1098 SMART helicmild6 962 1045 IPR001650 -
Gso20g0692 1098 SMART ring_2 862 901 IPR001841 -
Gso20g0692 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 703 IPR027417 -
Gso20g0692 1098 MobiDBLite consensus disorder prediction 117 156 - -
Gso20g0692 1098 CDD SF2_C_SNF 924 1046 - -
Gso20g0692 1098 Pfam Zinc finger, C3HC4 type (RING finger) 861 905 - -
Gso20g0692 1098 ProSiteProfiles Zinc finger RING-type profile. 862 902 IPR001841 -
Gso20g0692 1098 SUPERFAMILY RING/U-box 844 908 - -
Gso20g0692 1098 Pfam HIRAN domain 209 287 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gso20g0692 1098 ProSitePatterns Zinc finger RING-type signature. 877 886 IPR017907 -
Gso20g0692 1098 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 938 1094 IPR001650 -
Gso20g0692 1098 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 812 925 IPR013083 -
Gso20g0692 1098 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 361 1097 - -
Gso20g0692 1098 Gene3D - 466 704 IPR038718 -
Gso20g0692 1098 SMART ultradead3 411 673 IPR014001 -
Gso20g0692 1098 MobiDBLite consensus disorder prediction 46 74 - -
Gso20g0692 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 1088 IPR027417 -
Gso20g0692 1098 PANTHER DNA REPAIR PROTEIN RAD5B 361 1097 - -
Gso20g0692 1098 CDD DEXDc_SHPRH-like 415 703 - -
Gso20g0692 1098 Gene3D - 719 1098 IPR027417 -
Gso20g0692 1098 Pfam Helicase conserved C-terminal domain 933 1045 IPR001650 -
Gso20g0692 1098 Pfam SNF2-related domain 418 781 IPR000330 GO:0005524|GO:0140658
Gso20g0692 1098 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 471 665 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0692 Gso-Chr20 35891619 35897810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0692 183 1097 RAD5 or RAD16-like Gene Family AT5G43530 62.095 0.0 1179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso20g0692 SNF2_N 1e-80 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0692 K15505 - gmx:100806677 2120.89