Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0688 ATTGTCTTAGTGAGTCATGATGCATCTTCTTTCTTTATCATTACAAAAAATTATAGGGTAAGAAAATACCGTCCCAGTTCGACTCAGTCTAAAGCAGGGAAAACCTCCGAACTCACCCAGATCTTCTCTTGTAAGTTTTTATTTATTTTTTTTCTTCAAAGAAAACACTCTCAACACTCAACAGCAATTCTGGCTAATCCTTGGTGGACCGGCCATCAAGTGGGGTTGGGTGTAGGGGTAGACCCAGCAACCAATTCACCTTCTTCCACCCTAAACAAACGCCAAATGGACCTTTCCATCAACGAAAGAAGCCTTGTTAGAGAAAGACAAGAGGAAGACGAAGAAGATGAAAGAGACAACGGTGATGAACCCAAAGAGGGTGCAGTTGAGGTTGGAACACGCAGGCCAAGAGGGAGACCCCCTGGTTCCAAAAACAAGCCCAAACCCCCAATCTTTGTCACCAGGGACAGCCCAAACTCCCTCAGAAGCCATGTCATGGAGGTTGCTGGCGGTGCCGACGTTGCGGAAAGCGTGGCCCAGTTCGCACGGAGGCGCCAGCGTGGTGTGTGTGTCCTCAGTGGGAGCGGTGCCGTGGCCAACGTTACTCTTCGCCAACCTTCAGCGCCAGGAGCGGTCGTGGCACTTCATGGAAGGTTTGAGATTCTGTCCCTAACTGGGACGTTTCTACCTGGTCCTGCCCCACCAGGAGCTACAGGGCTCACTGTGTATCTTGGTGGAGGACAGGGTCAGGTAGTGGGAGGGAGCGTTGTGGGCTCCCTTGTGGCAGCTGGACCAGTGATGGTGATTGCTGCCACTTTTGCTAATGCTACCTATGAGAGGTTGCCGCTTGAGGAGGAGGAAGATGACGGTGGTGCTAGCGCACATGGAGGGAGTACCCTGGGAGGGTCTCCTCCTGGAATGGGTAACAGTGGTGGTAATGGTGATAATAGTGGTGGCGGTCACTTGTCAAGTGGTGGGATTCCTGATCCTTCTTCTTTGGCTTTGTATAATCTCCCACCAAATTTTATCCCTAATGGAGGCCACCATGAGGCTTTTGCTTGGGCTCATGGCCATGGAAGACCACCTTACTGA 1092 0.5119 IVLVSHDASSFFIITKNYRVRKYRPSSTQSKAGKTSELTQIFSCKFLFIFFLQRKHSQHSTAILANPWWTGHQVGLGVGVDPATNSPSSTLNKRQMDLSINERSLVRERQEEDEEDERDNGDEPKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTRDSPNSLRSHVMEVAGGADVAESVAQFARRRQRGVCVLSGSGAVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGATGLTVYLGGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLEEEEDDGGASAHGGSTLGGSPPGMGNSGGNGDNSGGGHLSSGGIPDPSSLALYNLPPNFIPNGGHHEAFAWAHGHGRPPY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0688 363 MobiDBLite consensus disorder prediction 80 159 - -
Gso20g0688 363 MobiDBLite consensus disorder prediction 303 320 - -
Gso20g0688 363 CDD DUF296 162 237 IPR005175 -
Gso20g0688 363 MobiDBLite consensus disorder prediction 82 99 - -
Gso20g0688 363 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 274 IPR005175 -
Gso20g0688 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 84 363 IPR014476 GO:0003680
Gso20g0688 363 ProSiteProfiles PPC domain profile profile. 158 295 IPR005175 -
Gso20g0688 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 84 363 - -
Gso20g0688 363 Gene3D - 161 288 - -
Gso20g0688 363 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 286 - -
Gso20g0688 363 MobiDBLite consensus disorder prediction 284 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0688 Gso-Chr20 35652651 35654243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0688 64 363 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 58.170 1.96e-96 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0688 - - gmx:100804543 418.698