Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0687 ATGTTAAAGGCAGTGTCATTTGAACTGTTGTTAATATGCTTGCTACTTCTTCGCACATGTGTGTGTGCAACAACAGATAATGGCTTTCCCAGATGTAACTGTGATGATGAGTCCAGCTTGTGGACTATTGAGACCATTTTGGAGTGCCAGAGAATTGGTGATTTTCTGATTGCTGTGGCCTACTTCTCCATCCCCATTGAGCTACTTTACTTTGTTAGTTGCTCAAACTTCCCTTTCAAATGGGTCCTCTTTCAGTTCATTGCTTTCATTGTACTTTGTGGAATGACACATTTGTTGAATGGGTGGACTTATGGTCCCCACACTTTTCAACTCATGGTGGCACTCACTGTCTTCAAAATCCTCACTGCCTTGGTGTCATGTGCAACTACCATTACCCTCCTCACCTTGATCCCTATGCTGTTGAAAGTGAAGGTTAGAGAATTGATGCTAAAGAAAAAGACTTGGGATCTTGGGAGGGAGGTTGGAATCATAATGAAACAGAAGGAGGCTGCAATGCATGTGAGGATGCTCACTCAGGAGATTCGCAAGTCGTTGGATAGGCATAAGATTCTCTACACCACCTTGGTTGAGCTGTCTAAGACACTTGGTTTGCAGAATTGTGCAGTGTGGATGCCAAATGTTGAGAAAACCGAGATGAACCTTACGCATGAATTGAATGGGAGGAATGTTAACTGTTCTATACCCATTACTAATCCGGATGTTGTGAGAATTAAGGGAAGTGACGAAGTGAACATAATTGATTCTGATTCAATACTTGCCACTGCTAGCAGTGGAGTTTATGGTGGGGCAGGACCAGTTGCTGCCATCCGCATGCCGATGCTTCAGGTTTGCAATTTCAAAGGGGGAACGCCAGAGCTAAGGCAGACGTGTTATGCCATATTGGTTTTGACTCTTCCTAGTGCGGAGCCTAGATCATGGGGCGCTCAAGAGCTGGAGATCATTAAGGTGGTTGCTGATCAGGTGGCTGTGGCTCTGTCTCATGCCTCGATTCTCGAAGAGTCTCAGCTCATGAGGGAAAAGTTGGAGGAGCAAAATCGAGCTTTGCAAATGGAAAAGATGAATACAATGATGGCGAGCCAGGCGAGAGCTTCGTTTCAGAAGGTCACGAGTAATGGAATGAGAAGGCCAATGCACTCAATTTTGGGGTTGCTTTCGATGATGCAAGATGATAATTTGAAGAGTGAACAGAAACTTATTGTGAATTCAATGCTAAGGACCAGCACTGTCTTGTCAAACTTGATAAATGATGCCATGGACTACTCAACTAGGGATGATGGAAGATTCCCTTTGGAGATGAAACCTTTTGGATTGCATGCTATGGTGAAAGAGGCAGCTTGTCTTGCCAAGTGCATGTGTGTTTATAGGGTCATTGGCTTTGTGGTTGATGTTGACAAGTCTTTGCCAGACAATGTTATAGGTGACGAAAAGAGGGTTTTTCAGGTGATTTTGCATATGGTTGGGAATGCAATAAATGGTAACCATGGAGGAGGGGTTCTTGTATTTCGAGTTTTTGCAGAAACTGGAAGTCAAGGAAGGAATGACCAGGGATGGACAACCTGGAGACCAAGCTCTTCTGGCGGGGATGTAAATATTAGATTTGAGATAGGGATCAATAATGGTGATCCTGAATTGGAGAGTTCAGTTCCTTCAGGGCAGCTTGCGGGTACAGATCGCACTAGTGATAAGGTTGAGGAAAGATTGAGCTTTAGCATTTGCAAGAGGATAATCCAGTTGATGCAAGGGAACATATGGTTAGTACCAAACGCTCAAGGTTTTCCTCAAGTCATGGCCCTTTTTCTTCGGTTTCAACTGTGGCGGTCTATTGCCGTATCCAACTCTGAACCTGGGGAAAATTCTGAGACATCCAATTCAATTTCTTTCTTCAGAGGTCTGCAGGTCTTGTTGGCCGACAATGACGATGTAAATAGAGCGGTGACACAGAAGTTGCTTCAGAAACTAGGCTGTGTTGTGACTTCTGTTTCTTCAGGATTTGAATGCCTTAACGTCATTGGACCTGCTGGTTCTTCCTTTCAAGTCATTCTTTTGGATCTTCACATGCCTGAGCTTGATGGGTTCGAAGTTGCAACGAGGATTCCCAAGTTCAGAAGCCGGAATTGGCCTGTGATTGTTGCCTTGACTGCAAGCACAGATGATTTGTGGGAAAGATGCATGCAAATTGGCATGAATGGAGTCATAAGAAAGCCAGTTTTGTTGCATGGAATCGCTAGTGAACTCAGAAGAATAATATTGCAGGGAAATAGTGTCATGTGA 2292 0.4407 MLKAVSFELLLICLLLLRTCVCATTDNGFPRCNCDDESSLWTIETILECQRIGDFLIAVAYFSIPIELLYFVSCSNFPFKWVLFQFIAFIVLCGMTHLLNGWTYGPHTFQLMVALTVFKILTALVSCATTITLLTLIPMLLKVKVRELMLKKKTWDLGREVGIIMKQKEAAMHVRMLTQEIRKSLDRHKILYTTLVELSKTLGLQNCAVWMPNVEKTEMNLTHELNGRNVNCSIPITNPDVVRIKGSDEVNIIDSDSILATASSGVYGGAGPVAAIRMPMLQVCNFKGGTPELRQTCYAILVLTLPSAEPRSWGAQELEIIKVVADQVAVALSHASILEESQLMREKLEEQNRALQMEKMNTMMASQARASFQKVTSNGMRRPMHSILGLLSMMQDDNLKSEQKLIVNSMLRTSTVLSNLINDAMDYSTRDDGRFPLEMKPFGLHAMVKEAACLAKCMCVYRVIGFVVDVDKSLPDNVIGDEKRVFQVILHMVGNAINGNHGGGVLVFRVFAETGSQGRNDQGWTTWRPSSSGGDVNIRFEIGINNGDPELESSVPSGQLAGTDRTSDKVEERLSFSICKRIIQLMQGNIWLVPNAQGFPQVMALFLRFQLWRSIAVSNSEPGENSETSNSISFFRGLQVLLADNDDVNRAVTQKLLQKLGCVVTSVSSGFECLNVIGPAGSSFQVILLDLHMPELDGFEVATRIPKFRSRNWPVIVALTASTDDLWERCMQIGMNGVIRKPVLLHGIASELRRIILQGNSVM* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0687 763 SUPERFAMILY GAF domain-like 189 335 - -
Gso20g0687 763 CDD HisKA 366 428 IPR003661 GO:0000155|GO:0007165
Gso20g0687 763 PIRSF Ethylen_sen_hybr_HK 1 763 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Gso20g0687 763 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 422 510 IPR036890 -
Gso20g0687 763 CDD HATPase_ETR2_ERS2-EIN4-like 474 607 - -
Gso20g0687 763 SUPERFAMILY CheY-like 635 755 IPR011006 -
Gso20g0687 763 Gene3D - 334 431 - -
Gso20g0687 763 Pfam His Kinase A (phospho-acceptor) domain 379 433 IPR003661 GO:0000155|GO:0007165
Gso20g0687 763 Pfam GAF domain 186 332 IPR003018 GO:0005515
Gso20g0687 763 SMART gaf_1 186 342 IPR003018 GO:0005515
Gso20g0687 763 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 363 434 IPR036097 GO:0000155|GO:0007165
Gso20g0687 763 MobiDBLite consensus disorder prediction 550 564 - -
Gso20g0687 763 ProSiteProfiles Response regulatory domain profile. 639 756 IPR001789 GO:0000160
Gso20g0687 763 Gene3D - 432 608 IPR036890 -
Gso20g0687 763 CDD REC_ETR-like 638 752 - -
Gso20g0687 763 Coils Coil 338 365 - -
Gso20g0687 763 MobiDBLite consensus disorder prediction 547 566 - -
Gso20g0687 763 SMART HisKA_10 368 433 IPR003661 GO:0000155|GO:0007165
Gso20g0687 763 ProSiteProfiles Histidine kinase domain profile. 375 590 IPR005467 -
Gso20g0687 763 SMART REC_2 638 756 IPR001789 GO:0000160
Gso20g0687 763 PANTHER ETHYLENE RESPONSE SENSOR 2 14 760 - -
Gso20g0687 763 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 14 760 - -
Gso20g0687 763 Pfam Response regulator receiver domain 640 743 IPR001789 GO:0000160
Gso20g0687 763 Gene3D - 165 333 IPR029016 -
Gso20g0687 763 Gene3D - 618 756 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0687 Gso-Chr20 35538776 35543206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0687 26 756 Miscellaneous Gene Families AT3G04580 57.584 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso20g0687 GAF 1.3e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0687 K14509 - gmx:100802948 1498.8