Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0679 ATGGCCTCCAAATTATTGATCAATGAAGTTGTGTTTGAAATTCAAGAATTCAGGGAGAGGTTTGTTGGTCATGGCCTTGGCATTCAGGTTCGGTCAGTTTTGACACCTGGTGGCCAGGGGAGTTCGCAAGTTTCAGGTTCAAGCCAATTGTCGTCAAAGGATGCATTTCTTTCAAAAGCTGAAGCAAAGACAATCTCTGAGATTAGCAACATTTCTGAGGAAATTGTTTGTGTTACTACTGGCTCCATTAATAGAATTGTTATGGATAACCATTCATGGTGTTATTCAGCTTGCAGTTACTGCTACAAAAAAACTGATGTTGAGACAGCAGCATTCACATGTGCATGTGGCAAACATAATGATCAACCTGTGCTAAGGTATAGACTTGAGGTGATGGTCAACTACAAGGAGGAAAGCACAAAATTTTTGCTCTGGGACTGTGAATGCACTGAGTTGATTGGACCATCAGCTAATGAAGTTAACAAGCTGAAAATTGAAGAGGGTGATGTTGATTTAAATGTTTCTCCTCAAGCCCTTGATAAGTTGCTGGGTTATGTCCTTGCATTTAAAGTCAAAGTTCAACCCAAGTTTAACAATGTTGTTGTTCTTAGATACTCAAATGACATAGATTTGATCAATGATGTGGTGGAGATGCTGCCTGATGCTGAGGCAATTTCCAAGGTTCATGGTCCTATTTTTGACTCCGATAATCCTCCGATGATCCTTCCCAACTTGAATCTGTAA 744 0.4005 MASKLLINEVVFEIQEFRERFVGHGLGIQVRSVLTPGGQGSSQVSGSSQLSSKDAFLSKAEAKTISEISNISEEIVCVTTGSINRIVMDNHSWCYSACSYCYKKTDVETAAFTCACGKHNDQPVLRYRLEVMVNYKEESTKFLLWDCECTELIGPSANEVNKLKIEEGDVDLNVSPQALDKLLGYVLAFKVKVQPKFNNVVVLRYSNDIDLINDVVEMLPDAEAISKVHGPIFDSDNPPMILPNLNL* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0679 247 CDD RPA1_DBD_C 59 205 IPR013955 -
Gso20g0679 247 Gene3D - 44 219 IPR012340 -
Gso20g0679 247 PANTHER REPLICATION FACTOR A 1, RFA1 61 152 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso20g0679 247 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 61 152 - -
Gso20g0679 247 SUPERFAMILY Nucleic acid-binding proteins 61 199 IPR012340 -
Gso20g0679 247 Pfam Replication factor-A C terminal domain 83 194 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0679 Gso-Chr20 35062548 35063781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0679 38 171 Core DNA Replication Machinery Family AT5G08020 31.884 3.42e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0679 - - gsj:114402039 470.7