Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0657 ATGGCTGCCACTGCCGCTGCAGGCATAGCTTCCTTGTTTTCTTCTTCTATTAACAGTGTCAAATGTCTTCGTTCCTCCAAGAACTGCTCCATTATAGACCCCCTTATAACCACAGTGCCCTCAAACCGTGGCATGTTTGTGTCACACTTGGTGGAACCTTTGTCCATTGGGGGTGCCATTAATTCGCACAAGTTGTGGGGGCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGCTGTTGTTGTGGCTGATGATGAGGTAGATGATGGTGCTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTAGTTGCAGAACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCCAAACTTGCAGGGCTAATTCAGGATTTTGGTAGCGCAGAACTAATTGAGGAGTTCCTGGGCAGAACCTTGAGGGTGAACTTCTCTAGCAAACCAAAACCAAAAGAACCCTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACTAATGAGATATTGACGCAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACTGGAAGATCACGTGGCTATGGTTTCGTTTGCTATTCAACAAAAGCTGAGATGGAAGCTGCCCTTGCAGCATTGAATGATGTGGAACTAGAAGGACGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTGCATAA 768 0.4544 MAATAAAGIASLFSSSINSVKCLRSSKNCSIIDPLITTVPSNRGMFVSHLVEPLSIGGAINSHKLWGPRISAAVAQEEAVVVADDEVDDGAGLVEEEKVEENEGEVVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDFGSAELIEEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAALNDVELEGRAMRVSLAQGKRA* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0657 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 252 IPR000504 GO:0003723
Gso20g0657 255 PANTHER TRANSFORMER-2-RELATED 163 254 - -
Gso20g0657 255 PANTHER TRANSFORMER-2-RELATED 92 152 - -
Gso20g0657 255 SUPERFAMILY RNA-binding domain, RBD 167 254 IPR035979 GO:0003676
Gso20g0657 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 245 IPR000504 GO:0003723
Gso20g0657 255 Gene3D - 160 255 IPR012677 -
Gso20g0657 255 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 92 152 - -
Gso20g0657 255 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 163 254 - -
Gso20g0657 255 SMART rrm1_1 175 248 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0657 Gso-Chr20 34298402 34302017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0657 176 253 Eukaryotic Initiation Factors Gene Family AT1G49760 38.462 3.40e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0657 - - gmx:100820203 434.876