Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0626 ATGACACCGGCAAGAAAGAAAATCGTGAAGTTCAATGCAACAGAACTAATCATCTCAATATATGCACTGAAAATTGGAATGACACGCGTTGTCCAGCTCTCTTTGTTGGGTTCAATATTGTCCAATATGTTACTGGTGCTTGGGTGTGCATTCTTATGTGGTGGGATTGTTAATCACGAGAAGGAGCAAGTGTTTAACAAGGCAGCTACTTCCGTGAACTCAGGATTATTGCTAATGGCAGTCATGGGCATACTTTTTCCTGCTGTTCTACACTACACTCACAGTGAGGTCCATGTTGGGAAGTCAGAGTTGTCACTTTCAAGATTCAGCAGCTGCATTATGCTTGTGGCTTATGTTGCATACCTATTTTTTCAGTTAAAAAGTCAAAGAAATCTCTACGTCTCTGTGAACGAGGGAGCATCTATGGCATGGGAAATTCCAGTAGCATTTATTAGTGTCATATTGCTTCCACTAGTGGGGAATGCAACTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGCCGGCAGGTTGGTTGTTCTACCTATTGATGATAGGCACACACATTTACTTGGCAGCCGGCAGGTTGGTGAAAATGCTTTTTTTGTATGATGTTTGA 681 0.4141 MTPARKKIVKFNATELIISIYALKIGMTRVVQLSLLGSILSNMLLVLGCAFLCGGIVNHEKEQVFNKAATSVNSGLLLMAVMGILFPAVLHYTHSEVHVGKSELSLSRFSSCIMLVAYVAYLFFQLKSQRNLYVSVNEGASMAWEIPVAFISVILLPLVGNATEHASAIMFAMKDKLDISLGVAIGSSTQISMFVPAGWLFYLLMIGTHIYLAAGRLVKMLFLYDV* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0626 226 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 136 195 IPR004713 GO:0006812|GO:0008324|GO:0016021
Gso20g0626 226 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 12 138 IPR004713 GO:0006812|GO:0008324|GO:0016021
Gso20g0626 226 Pfam Sodium/calcium exchanger protein 12 126 IPR004837 GO:0016021|GO:0055085
Gso20g0626 226 Pfam Sodium/calcium exchanger protein 139 195 IPR004837 GO:0016021|GO:0055085
Gso20g0626 226 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 12 138 - -
Gso20g0626 226 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 136 195 - -
Gso20g0626 226 Gene3D - 11 224 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0626 Gso-Chr20 32799489 32804593 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0626 12 200 Antiporters AT3G13320 62.762 2.82e-93 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0626 K07300 - gmx:100804380 394.815