Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0610 ATGAAAGGTTTTGATATTAAGATGGCTGGGGATATCAAGGAGGGGAGAGCAGGGTGTTCTGTTATTTTTCTGCTATTGACTTTACTTCTTTGTAGCACTGAGGGTTTAAACACTGAGGGGCAAATCCTCCTAGACCTTAAGAAAGGACTTCACGATAAATCTAATGTTCTGGAAAATTGGAGGTCTACTGATGAAACCCCGTGTGGCTGGGTAGGTGTAAACTGCACTCATGATGATAATAACAACTTTTTGGTTGTGTCTCTTAATTTGAGTTCATTGAATCTTTCTGGAAGTCTAAATGCTGCTGGCATTGGGGGTCTGACCAATCTAACTTATCTCAATCTTGCTTACAATAAGCTGACTGGAAATATTCCCAAGGAGATTGGTGAGTGTTTGAATTTGGAATATCTTTATTTGAACAATAATCAGTTTGAGGGGACTATTCCTGCTGAATTGGGTAAGCTGTCTGTTTTGAAAAGTTTGAATATTTTCAACAACAAACTCTCTGGTGTGCTTCCAGATGAGTTCGGGAACTTGTCTTCATTGGTTGAGTTAGTGGCCTTTAGCAACTTTCTTGTTGGACCCTTGCCTAAATCCATTGGAAATCTTAAGAATCTTGTAAATTTCAGAGCTGGGGCAAATAACATTACCGGTAACTTGCCGAAGGAAATCGGTGGATGTACGAGCTTAATACTTCTTGGTCTTGCTCAAAATCAGATAGGAGGGGAGATACCAAGGGAGATTGGGATGCTTGCCAACTTGAATGAACTGGTTTTATGGGGAAACCAGTTGTCAGGACCTATTCCTAAAGAGATTGGGAATTGTACCAATCTTGAGAACATTGCTATCTATGGGAATAATCTTGTTGGACCTATACCTAAGGAAATTGGGAACCTCAAATCATTGAGGTGGCTGTATCTTTACAGAAACAAGTTAAATGGAACCATTCCAAGGGAAATTGGAAATCTTTCGAAATGTTTAAGCATTGATTTCTCAGAGAACTCTTTAGTAGGTCATATCCCTTCAGAGTTTGGAAAAATAAGTGGTCTAAGTTTGCTCTTTCTCTTTGAGAACCACCTAACTGGTGGTATACCAAATGAGTTTAGTAGCTTGAAGAACCTGTCACAGCTGGACCTGTCAATAAATAATCTCACAGGTTCAATTCCATTTGGTTTCCAATATTTGCCGAAAATGTATCAGCTGCAACTTTTTGACAACTCCCTAAGTGGTGTTATTCCTCAAGGACTCGGACTTCGTAGTCCTCTTTGGGTGGTTGATTTTTCTGATAACAAATTGACAGGAAGAATACCGCCTCATCTATGCCGAAATTCAAGCTTGATGTTGTTGAATCTGGCAGCTAATCAGCTCTATGGAAATATACCAACAGGGATACTAAACTGTAAATCATTGGCACAGTTGTTGTTACTTGAAAACAGGCTTACTGGCAGCTTCCCTTCTGAATTGTGTAAGCTGGAGAACTTGACTGCCATTGATTTGAATGAGAACAGGTTCAGTGGTACACTCCCTTCTGATATAGGGAACTGCAACAAATTGCAAAGGTTTCACATTGCGGACAATTACTTCACATTGGAGTTGCCTAAGGAAATAGGAAATCTCTCTCAATTGGTGACCTTTAATGTTTCATCAAATCTTTTCACTGGAAGAATCCCACGTGAAATTTTTTCATGTCAAAGGCTACAGCGGCTTGATCTCAGCCAGAATAACTTTTCTGGTTCCTTGCCAGATGAGGTTGGAACACTTCAGCACTTGGAGATTCTCAAGCTCTCAGACAATAAGCTGTCTGGATATATTCCTGCAGCATTAGGCAATCTGTCTCATTTGAACTGGTTGTTGATGGATGGCAATTATTTCTTTGGTGAAATACCTCCCCATTTGGGTTCTCTTGCAACTTTGCAAATTGCAATGGATCTCAGTTACAATAACCTTTCTGGAAGAATACCGGTTCAGCTTGGCAATCTCAACATGCTTGAATTTCTCTATCTCAATAACAACCATTTGGATGGTGAAATTCCCAGCACATTTGAAGAGCTTTCTAGCTTATTGGGGTGCAATTTCTCATTCAACAACCTCTCTGGTCCTATTCCTTCCACTAAAATTTTCCAAAATATGGCTATAAGCAGCTTTATTGGTGGTAACAACGGCCTCTGTGGTGCACCTCTCGGTGACTGCAGCGATCCAGCTTCTCACTCTGATACTCAAGGGAAAAGTTTTGATTCTTCTCGCGCTAAAATAGTCATGATCATTGCAGCTTCTGTTGGAGGTGTTTCACTCGTTTTCATTTTAGTTATTTTACATTTTATGAGGCGTCCTCGGGAGTCAACTGATTCCTTTCAAGGCACTGAGCCTCCCTCCCCAGATTCAGATATCTATTTCCCTCCAAAGGAAGGTTTCACTTTCCATGATCTAGTTGAAGCCACAAAAAGATTTCATGAAAGCTATGTTATTGGTAAGGGAGCATGTGGAACCGTTTATAAGGCAGTGATGAAATCTGGTAAGACCATTGCTGTTAAGAAGTTAGCATCTAACAGGGAAGGGAACAACATTGAGAATAGTTTCAGGGCTGAAATAACTACTCTGGGAAGAATAAGGCATCGGAATATAGTGAAATTGTATGGCTTTTGCTATCAACAGGGTTCCAATCTCCTGCTTTATGAGTACATGGAAAGAGGTAGCTTAGGTGAACTATTACATGGTAATGCAAGTAATTTGGAGTGGCCAATTCGGTTCATGATTGCTCTTGGAGCTGCTGAGGGTCTTGCCTACTTGCATCATGACTGCAAACCAAAGATTATTCACCGCGATATAAAATCTAACAACATTCTGCTGGATGAAAATTTTGAGGCCCATGTTGGTGATTTTGGTTTGGCAAAAGTGATTGACATGCCCCAGTCAAAGTCTATGTCTGCGGTCGCTGGATCTTATGGCTATATTGCACCTGAATATGCATATACAATGAAGGTGACAGAGAAGTGTGACACTTATAGCTTTGGTGTTGTGCTATTGGAATTGCTAACTGGAAGAACACCAGTTCAGCCACTAGAGCAAGGTGGTGACCTTGTCACATGGGTGAGGAACCATATCCGGGACCACAACAACACATTGACACCAGAGATGCTCGACAGCCGCGTAGATCTTGAAGACCAAACCACTGTGAATCACATGCTCACTGTTTTGAAGCTTGCTTTACTGTGCACAAGTGTGTCTCCTACCAAGAGGCCATCGATGCGGGAAGTTGTGTTGATGCTTATCGAGTCAAACGAGCGAGAAGGGAACTTAACACTTACTCAAACATACCATGATCTTCCTTCCAAAGATGGCATGTGA 3345 0.4108 MKGFDIKMAGDIKEGRAGCSVIFLLLTLLLCSTEGLNTEGQILLDLKKGLHDKSNVLENWRSTDETPCGWVGVNCTHDDNNNFLVVSLNLSSLNLSGSLNAAGIGGLTNLTYLNLAYNKLTGNIPKEIGECLNLEYLYLNNNQFEGTIPAELGKLSVLKSLNIFNNKLSGVLPDEFGNLSSLVELVAFSNFLVGPLPKSIGNLKNLVNFRAGANNITGNLPKEIGGCTSLILLGLAQNQIGGEIPREIGMLANLNELVLWGNQLSGPIPKEIGNCTNLENIAIYGNNLVGPIPKEIGNLKSLRWLYLYRNKLNGTIPREIGNLSKCLSIDFSENSLVGHIPSEFGKISGLSLLFLFENHLTGGIPNEFSSLKNLSQLDLSINNLTGSIPFGFQYLPKMYQLQLFDNSLSGVIPQGLGLRSPLWVVDFSDNKLTGRIPPHLCRNSSLMLLNLAANQLYGNIPTGILNCKSLAQLLLLENRLTGSFPSELCKLENLTAIDLNENRFSGTLPSDIGNCNKLQRFHIADNYFTLELPKEIGNLSQLVTFNVSSNLFTGRIPREIFSCQRLQRLDLSQNNFSGSLPDEVGTLQHLEILKLSDNKLSGYIPAALGNLSHLNWLLMDGNYFFGEIPPHLGSLATLQIAMDLSYNNLSGRIPVQLGNLNMLEFLYLNNNHLDGEIPSTFEELSSLLGCNFSFNNLSGPIPSTKIFQNMAISSFIGGNNGLCGAPLGDCSDPASHSDTQGKSFDSSRAKIVMIIAASVGGVSLVFILVILHFMRRPRESTDSFQGTEPPSPDSDIYFPPKEGFTFHDLVEATKRFHESYVIGKGACGTVYKAVMKSGKTIAVKKLASNREGNNIENSFRAEITTLGRIRHRNIVKLYGFCYQQGSNLLLYEYMERGSLGELLHGNASNLEWPIRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDTYSFGVVLLELLTGRTPVQPLEQGGDLVTWVRNHIRDHNNTLTPEMLDSRVDLEDQTTVNHMLTVLKLALLCTSVSPTKRPSMREVVLMLIESNEREGNLTLTQTYHDLPSKDGM* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0610 1114 SUPERFAMILY L domain-like 629 723 - -
Gso20g0610 1114 SUPERFAMILY RNI-like 292 632 - -
Gso20g0610 1114 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 17 1100 - -
Gso20g0610 1114 Pfam Leucine Rich Repeat 133 155 IPR001611 GO:0005515
Gso20g0610 1114 Pfam Leucine Rich Repeat 663 684 IPR001611 GO:0005515
Gso20g0610 1114 Gene3D Phosphorylase Kinase; domain 1 790 893 - -
Gso20g0610 1114 SUPERFAMILY L domain-like 56 414 - -
Gso20g0610 1114 Gene3D Ribonuclease Inhibitor 293 419 IPR032675 -
Gso20g0610 1114 Pfam Protein kinase domain 817 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0610 1114 SMART LRR_typ_2 251 275 IPR003591 -
Gso20g0610 1114 SMART LRR_typ_2 155 178 IPR003591 -
Gso20g0610 1114 SMART LRR_typ_2 660 683 IPR003591 -
Gso20g0610 1114 SMART LRR_typ_2 587 610 IPR003591 -
Gso20g0610 1114 SMART LRR_typ_2 107 131 IPR003591 -
Gso20g0610 1114 SMART LRR_typ_2 299 323 IPR003591 -
Gso20g0610 1114 SMART LRR_typ_2 491 515 IPR003591 -
Gso20g0610 1114 SMART LRR_typ_2 371 394 IPR003591 -
Gso20g0610 1114 SMART LRR_typ_2 539 563 IPR003591 -
Gso20g0610 1114 Gene3D Transferase(Phosphotransferase) domain 1 894 1107 - -
Gso20g0610 1114 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 17 1100 - -
Gso20g0610 1114 ProSitePatterns Serine/Threonine protein kinases active-site signature. 937 949 IPR008271 GO:0004672|GO:0006468
Gso20g0610 1114 Gene3D Ribonuclease Inhibitor 420 734 IPR032675 -
Gso20g0610 1114 SMART serkin_6 816 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0610 1114 Gene3D Ribonuclease Inhibitor 191 292 IPR032675 -
Gso20g0610 1114 Gene3D Ribonuclease Inhibitor 35 190 IPR032675 -
Gso20g0610 1114 SUPERFAMILY Protein kinase-like (PK-like) 793 1089 IPR011009 -
Gso20g0610 1114 Pfam Leucine rich repeat 565 623 IPR001611 GO:0005515
Gso20g0610 1114 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Gso20g0610 1114 ProSiteProfiles Protein kinase domain profile. 816 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0610 Gso-Chr20 32101073 32106375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0610 56 1089 Receptor kinase-like Gene Family AT1G73080 38.113 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso20g0610 Pkinase 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0610 - - gmx:100805792 2163.65