Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0596 ATGGCGGTTTCTTCTTCTTCTGCAACAAAATGGGTCGTCTTCTTGCTTCTGGCGCTGCTTATTCGAGAAGAAGCTATGGCTACACCACAGATCTCTGACCTCAGGAATCTTGAAGTTGAAAGACACAGGTTGCCGAGCTTGACGAACTCGTCAATGGCGGAGAGGGCAAAAGAGGCTGAGAAATTAAATGAACAAGCTGCAGTGGCTAACCCAGAGGAAGTGGTTTCAATGGTTGAGATGAGCATCCAAAACAGCACAGAGAGGAGGAAGTTGGGATTTTTCTCTTGTGGAACTGGCAACCCCATTGATGATTGCTGGCGTTGCGACCCCAACTGGCAACGCAACCGGAAGCGTCTTGCAGATTGTGGCATTGGTTTTGGCCGAAACGCCATCGGTGGCCGTGATGGAAAATTCTATGTGGTGACTGACCCCAGGGATGATGACCCCGTGAACCCGAAACCCGGCACTCTTCGCCATGCTGTGATCCAGGATAAGCCATTGTGGATTGTGTTCAAGAGGGACATGGTTATTCAGCTGAAACAAGAGCTGATCATGAACAGCTTCAAGACAATTGATGGTAGAGGAGTCAATGTGCACATTGCTAATGGAGCATGCATCACAATTCAGTTTGTTACCAATGTCATCATCCATGGCTTGCACATTCATGATTGCAAACCTACTGGAAATGCTATGGTGAGAAGCTCCCCAACCCACTTTGGTTGGAGGACAATGGCTGATGGAGATGCCATCTCCATATTTGGCTCAAGCCACATTTGGGTTGACCACAACTCCTTGTCACACTGTGCTGATGGCCTTGTGGATGCTGTCCTAGGCTCAACAGCCATAACTATTTCCAACAACCACTTCACCCACCACAATGAGGTGATTCTGCTGGGCCACAGTGACTCTTACACAAGAGACAAGCAGATGCAAGTGACCATCGCATACAACCATTTTGGAGAGGGACTTATCCAGAGAATGCCACGTTGTAGACATGGATATTTCCACGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTAATCCCACCATCAACAGCCAGGGCAACAGATACAATGCTCCTACTAACCGTTTTGCCAAGGAGGTGACAAAGAGAGTGGAAACAGCAGAAAGTCAGTGGAAGGGTTGGAATTGGAGGTCAGAGGGAGATTTGTTGCTGAATGGCGCCTATTTCACACCATCTGGTGCTGGAGCCTCAGCAAGCTATGCAAGAGCCTCTAGCTTAGGAGCAAAATCTTCTTCCATGGTTGGTTCCATGACTTCCAATGCTGGTGCACTAGGTTGCAAAAGAGGCAGTCAGTGCTAG 1347 0.484 MAVSSSSATKWVVFLLLALLIREEAMATPQISDLRNLEVERHRLPSLTNSSMAERAKEAEKLNEQAAVANPEEVVSMVEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVLGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPTNRFAKEVTKRVETAESQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCKRGSQC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0596 448 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Gso20g0596 448 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Gso20g0596 448 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Gso20g0596 448 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Gso20g0596 448 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Gso20g0596 448 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Gso20g0596 448 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Gso20g0596 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Gso20g0596 448 Gene3D - 99 441 IPR012334 -
Gso20g0596 448 SMART amb_all 174 371 IPR002022 -
Gso20g0596 448 Pfam Pectate lyase 181 363 IPR002022 -
Gso20g0596 448 SUPERFAMILY Pectin lyase-like 74 442 IPR011050 -
Gso20g0596 448 PANTHER PECTATE LYASE 14 445 - -
Gso20g0596 448 PANTHER PECTATE LYASE 18-RELATED 14 445 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0596 Gso-Chr20 31159173 31165011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0596 30 448 Polysaccharide Lyase AT4G13710 80.189 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0596 K01728 - gmx:100808253 913.294