Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0578 ATGGAGTTTAAGCACCATGAGAAAACTGAGTTGAGCATGCCCGCAGCAACAGCGAGTCACAACGACTTTGGAATACCGCCCTCAAGTCAAGGCGAAGAGGAGCCAGTGGCGGCGGTGATACCAGTGGCGATTCCAGTGACCCCAACACCACCCACCTTGGCTCAAAACAACGACAATGAGAAGTATCATGAGTGCCTTAAGAACCACACCGTCAAAACTGGCGTCCATACACTTGATGGATGCATCAAGTTCTTGCCTCTAGGTGAGGAGGGAACCCTGGATGCGCTAAAATGCCTCGTGTGCAACTGCCACCGAAACTTCCATCGTAAGGAGACCCCCAATGACACCTACCTGGTGCCCTACTACCACCACTTGCCGTTGCCATTGGTAGCGTACTATGGGGAGCAGATGGGCTACCCCCGTGTGCAAGGGCAACAATGCACCACACTGGCACTCCCCTCCAGGTCAAGGGGTAGTGGTGGGGCCCAGTCCTCGAGGGAGGACATGGAAGCAGTGTCAAACCCAACGAGTGCCACTCCTCATGGCGGGTCCAGCAAGAAGCGTTTCAGGACTAGGTTCACCCTAGAGCAAAAAGAGAAGATGTTGGCCTTTGCAGAAAAGCTTGGTTGGAGGATTCTGAAGAACGATGAGAGTGTCGTGCAGGAGTTTTGTGCCCAAACTAGCATCCTACCTAATGTGCTTAAGGTGTGGGTGCACAACAACATGCACACCTTAGGTAAGAAGCTATAG 750 0.5293 MEFKHHEKTELSMPAATASHNDFGIPPSSQGEEEPVAAVIPVAIPVTPTPPTLAQNNDNEKYHECLKNHTVKTGVHTLDGCIKFLPLGEEGTLDALKCLVCNCHRNFHRKETPNDTYLVPYYHHLPLPLVAYYGEQMGYPRVQGQQCTTLALPSRSRGSGGAQSSREDMEAVSNPTSATPHGGSSKKRFRTRFTLEQKEKMLAFAEKLGWRILKNDESVVQEFCAQTSILPNVLKVWVHNNMHTLGKKL* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0578 249 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 186 241 IPR006455 -
Gso20g0578 249 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 111 IPR006456 -
Gso20g0578 249 Pfam ZF-HD protein dimerisation region 60 112 IPR006456 -
Gso20g0578 249 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 52 248 - -
Gso20g0578 249 MobiDBLite consensus disorder prediction 151 184 - -
Gso20g0578 249 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 52 248 - -
Gso20g0578 249 MobiDBLite consensus disorder prediction 151 189 - -
Gso20g0578 249 Gene3D - 171 246 - -
Gso20g0578 249 MobiDBLite consensus disorder prediction 1 34 - -
Gso20g0578 249 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 61 111 IPR006456 -
Gso20g0578 249 SUPERFAMILY Homeodomain-like 173 247 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0578 Gso-Chr20 30341155 30342254 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0578 61 245 ZF-HD Transcription Factor Family AT4G24660 49.206 3.58e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso20g0578 ZF-HD_dimer 5.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0578 - - gmx:100789893 462.611