Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0576 ATGGAGTTTAAGCAACATGAGGAAACTGAGTTGAGGATGCCCACAGCAACAGCGAGTCACGACAACTTCGGAATACCGCCCTCAAGTCAAGGTGAAGAGGAGCTAGTGGCGGCGGTGATACCAGTGGCGATTCCAGTGACCCCTACACCACCCATCCTGGCTCAAAACAACGACAATGAGAAGTATCATGAGTGCCTTAAGAACCACACCATCAAAACTGGCGTCCACACACTTGATGGATGCATCAAGTTCTTGCCTCTAGGCGAGGAGGGAACCCTGGATGCGCTAAAATGCCTCGTGTGCAACTGCCACCGAAACTTCCATCGTAAGGAGACCCCCAATGACACCTACCTGGTGCCTTACTACTACCACCACTCGTCGTTGCCGTTGGCAGCGTACTATGGGGAGCAGGTGGGCTACCCCCGTGTGCAAGGGCAACAATGCACCACACTGGCACTCCCCTCCAGGTCAAGGGGTAGTGGTGGGGCCCAGTCCTCGAGGGAGGACATGGAAGCAGTGTCAGACCCAACGAGTGGTGCCACTCCTCATGGCGGGTCCAACAAGAAGCGTTTCAGGACTAGGTTCACCCAAGAGCAAAAGGAGAAGATGTTGGTCTTTGCAGAAAAGCTTGGCTGGAGTATTCTAAAGCACGATGATAGTGTTGTGCAGGAGTTTTGTGCCCAAACTAGCATCCAACCTCATGTGCTTAAGGTGTGGGTGCACAACAACAAGCACACCTTAGGTAAGAAGCTCTAG 756 0.5304 MEFKQHEETELRMPTATASHDNFGIPPSSQGEEELVAAVIPVAIPVTPTPPILAQNNDNEKYHECLKNHTIKTGVHTLDGCIKFLPLGEEGTLDALKCLVCNCHRNFHRKETPNDTYLVPYYYHHSSLPLAAYYGEQVGYPRVQGQQCTTLALPSRSRGSGGAQSSREDMEAVSDPTSGATPHGGSNKKRFRTRFTQEQKEKMLVFAEKLGWSILKHDDSVVQEFCAQTSIQPHVLKVWVHNNKHTLGKKL* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0576 251 Pfam ZF-HD protein dimerisation region 60 112 IPR006456 -
Gso20g0576 251 Gene3D - 173 248 - -
Gso20g0576 251 MobiDBLite consensus disorder prediction 151 190 - -
Gso20g0576 251 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 54 250 - -
Gso20g0576 251 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 111 IPR006456 -
Gso20g0576 251 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 54 250 - -
Gso20g0576 251 MobiDBLite consensus disorder prediction 1 28 - -
Gso20g0576 251 SUPERFAMILY Homeodomain-like 175 249 IPR009057 -
Gso20g0576 251 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 61 111 IPR006456 -
Gso20g0576 251 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 188 244 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0576 Gso-Chr20 30291531 30292558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0576 61 247 ZF-HD Transcription Factor Family AT4G24660 47.895 2.11e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso20g0576 ZF-HD_dimer 5.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0576 - - gmx:100789367 485.723