Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0575 ATGGAGTTTAAGCATCATGAGGAAACTGAGTTGAGGATGCCCGCAGCAACAACGAGTTACGACGACTTCGGAATACCGCCCTCAAGTCAAGGCGAAGAGGAGCCAGTGGCGGCGGCGATACCAGTGGCGATTCCAATGACCCCAACACCACCCACCCTGGCTCAAAACAACGACAATGAGAAGTATCATGAGTGCCTTAAGAACCACACCATCAAAACTGGTGTCCACACACTTGATGGATGCATCAAGTTCTTGCCTCTAGGCGAGGAGGGAACCCTGGATGCGCTAAAATGCCTCATGTGCAACTGCCACCGAAACTTCCATCGTAAGAAGACCCCCAATTACACCTACCTGGTGCCTTACTACCGCCACTCACCATTGCCGTTGGCAGCGTACTATGGGGAGCAGGTGGGCTACCCCCATGTGCAAGGGCAACAATGCACCACACTGGCACTCCCCTCCAGGTCAAGGGGTAGTGGTGGGGCCCAGTCCTCGAGGGAGGACATTGAAGCAGTGTCAGACCCAACGAGTGGTGCCACTCCTCATGGCGGGTCCAGCAAGAAGCGTTTCAGGACTAGGTTCACCCAAGAGCAAAAGGAGAAGATGTTGGCCTTTGCAGAAAAGCTTGGCTGGAGGATTTTGAAGCATGATGAGAGTGATGTGCAGGAGTTTTGTGCCGAAACTAGCATCCAACCTCATGTGCTTAAGGTGTGGGTGAACAACAACAAGAACACCTTAGGTAAGAAGCTCTAG 753 0.5286 MEFKHHEETELRMPAATTSYDDFGIPPSSQGEEEPVAAAIPVAIPMTPTPPTLAQNNDNEKYHECLKNHTIKTGVHTLDGCIKFLPLGEEGTLDALKCLMCNCHRNFHRKKTPNYTYLVPYYRHSPLPLAAYYGEQVGYPHVQGQQCTTLALPSRSRGSGGAQSSREDIEAVSDPTSGATPHGGSSKKRFRTRFTQEQKEKMLAFAEKLGWRILKHDESDVQEFCAETSIQPHVLKVWVNNNKNTLGKKL* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0575 250 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 52 249 - -
Gso20g0575 250 Pfam ZF-HD protein dimerisation region 60 112 IPR006456 -
Gso20g0575 250 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 187 244 IPR006455 -
Gso20g0575 250 MobiDBLite consensus disorder prediction 152 190 - -
Gso20g0575 250 Gene3D - 172 247 - -
Gso20g0575 250 SUPERFAMILY Homeodomain-like 174 248 IPR009057 -
Gso20g0575 250 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 61 111 IPR006456 -
Gso20g0575 250 MobiDBLite consensus disorder prediction 1 34 - -
Gso20g0575 250 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 111 IPR006456 -
Gso20g0575 250 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 52 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0575 Gso-Chr20 30255873 30257019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0575 61 246 ZF-HD Transcription Factor Family AT4G24660 50.000 6.61e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso20g0575 ZF-HD_dimer 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0575 - - gmx:100788836 499.975