Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0574 ATGGAGGATAGGGTCACGACCGACCAATCGTCACCCCTTCCCGGCGCTGGGCCAGCGGAGAACGTCGCTGCAAGGCAGCCCGGAGATGGCCCCAAGGAATATCATGAGTGCCTTAAGAACCACACCGTCAAAATTGGCGGCCACACACTTGATGGATGCATCAAGTTCTTGCCTCTGGGCGAGGAGGGAACCCTGGATGCGCTGAAATGCCTCGTGTGCAACTGCCACCGAAACTTCCATCGTAAGGAGACCCCCAATGACACCTACCTGGTGCCTTACTACCACCACTCGCCGTTGCCGTTGGCAGCGTACTATGGGGAGCAAGTGGGCTACCCCCGTTTGCAAGGGCAACAATGCACCACACTAGCACTCCCCACCAGGTCAAGGGGCAATGGTGGGGCCCAGTCCTCAAGGGAGGACTTGGAGGCAGTGTCAGACCCAACGAGTGGTGCCACTCCTTATGGCGGGTCCAGTAAGAAGCGTTTCAGGACTAGGTTCACCCAAGAGCAAAAGGAGAAGATGTTGGCCTTTGCAGAAAAGCTTGGTCGGAGGATTCTTAAGCACAATGAGAGTGTTGTGCAGGAGTTTTGTGCCCAAACTAGCGTCCAACCTCATGTGCTTAAGGTGTGGGTGACCAACAACAAGCACACCTTGGGTAAGAAGCCCTAG 669 0.559 MEDRVTTDQSSPLPGAGPAENVAARQPGDGPKEYHECLKNHTVKIGGHTLDGCIKFLPLGEEGTLDALKCLVCNCHRNFHRKETPNDTYLVPYYHHSPLPLAAYYGEQVGYPRLQGQQCTTLALPTRSRGNGGAQSSREDLEAVSDPTSGATPYGGSSKKRFRTRFTQEQKEKMLAFAEKLGRRILKHNESVVQEFCAQTSVQPHVLKVWVTNNKHTLGKKP* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0574 222 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 221 - -
Gso20g0574 222 Pfam ZF-HD protein dimerisation region 33 84 IPR006456 -
Gso20g0574 222 Gene3D - 144 220 - -
Gso20g0574 222 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 22 221 - -
Gso20g0574 222 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 33 83 IPR006456 -
Gso20g0574 222 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 159 215 IPR006455 -
Gso20g0574 222 MobiDBLite consensus disorder prediction 1 32 - -
Gso20g0574 222 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 34 83 IPR006456 -
Gso20g0574 222 SUPERFAMILY Homeodomain-like 146 220 IPR009057 -
Gso20g0574 222 MobiDBLite consensus disorder prediction 125 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0574 Gso-Chr20 30191067 30200267 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0574 34 218 ZF-HD Transcription Factor Family AT4G24660 48.677 4.69e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso20g0574 ZF-HD_dimer 9.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0574 - - gsj:114401970 468.003