Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0571 AAAAACAACGACAATGAGAAGTATCATGAGTGCCTTAAGAACCACACCGTCAAAATTGGCGGCCACACACTTGATGAATGCATCAAGTTCTTGCCTCTGGGCAAGGAGGGAACCCTGGACGTGCTAAAATGCCTCGTGTGCAACTGCCACCGAAACTTCCATCGTAAGGAGACCCCCAATGACACCCACCCGGTGCCTTACTACCACCACTCGCCGTTGCTGTTGGCAGCGTACTATGGGGAGCAAGTGGGCTACCCCCGTCTGGAAGGGCAACAATGCACCACACTGGCACTCCCCACCAGGTCAAGGGGCAATGGTAGGGCCCAGTCCTCAAGGGAGGACATGGAGGCAGTGTCAGACCCAACGAGTGGTGCCACTCCTCATGGCGGGTCCAGCAAGAAGCGTTTCAGGACTAGGTTCACCCAAGAGCAAACGGAGAAGATGTTGGCCTTTGCAAAAAAGCTTGGTCAGAGGATTCTTAAGCACAATGAGAGTGTTGTGCAGGAGTTTTGTGCCCAAACTAGCGTCCAGCCTCATGTGCTTAAGGTGTGGGTGCACAACAACAGGCACACCTTGGGTAAGAAGCCCTAG 591 0.5381 KNNDNEKYHECLKNHTVKIGGHTLDECIKFLPLGKEGTLDVLKCLVCNCHRNFHRKETPNDTHPVPYYHHSPLLLAAYYGEQVGYPRLEGQQCTTLALPTRSRGNGRAQSSREDMEAVSDPTSGATPHGGSSKKRFRTRFTQEQTEKMLAFAKKLGQRILKHNESVVQEFCAQTSVQPHVLKVWVHNNRHTLGKKP* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0571 196 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 7 57 IPR006456 -
Gso20g0571 196 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 8 57 IPR006456 -
Gso20g0571 196 SUPERFAMILY Homeodomain-like 120 194 IPR009057 -
Gso20g0571 196 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 133 189 IPR006455 -
Gso20g0571 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 195 - -
Gso20g0571 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 3 195 - -
Gso20g0571 196 Gene3D - 118 194 - -
Gso20g0571 196 Pfam ZF-HD protein dimerisation region 6 58 IPR006456 -
Gso20g0571 196 MobiDBLite consensus disorder prediction 99 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0571 Gso-Chr20 30080989 30081747 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0571 7 192 ZF-HD Transcription Factor Family AT4G24660 46.032 3.54e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso20g0571 ZF-HD_dimer 3.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0571 - - gsj:114401969 417.542