Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0564 ATGGCTCCTACACTTCAACATGCACTTTCTCATCTACTCACTCTCGTAGTTTCACTATCAATACTCCTAGTGGTACCCTCCTCTTGTTTCAACCCCAAAAAGATTGTGAATGCTTCCTATGCTTCATGCTCATATGGTTCAGATTGGTCACCTGCTATAGCCACTTGGTATGGACTTGCCAAAGGGGACAGTAGTGAAGGTGGTGCTTGTGGTTATGGCAGTGCTGTTGGGGAACCTCCTTTCTCATTATTGATATCGGCGGGAAGCCCTCTTTTGTTTGAATCAGGCAAAGGTGGTGGTTCTTGTTATGAGGTTAAACCTTCTGAAACTTTATATACAGAGGAGTTGAACTTGACAAAAATAGCAGAGGAAAATATTAGGAAAGAAAAGGAAGAACTTGAGAATATGAAGAGCTTCAGAGACAAGGTTAAGGAACAACTCTTCCTTGCTCTTGATCAAAATGAATGA 468 0.4167 MAPTLQHALSHLLTLVVSLSILLVVPSSCFNPKKIVNASYASCSYGSDWSPAIATWYGLAKGDSSEGGACGYGSAVGEPPFSLLISAGSPLLFESGKGGGSCYEVKPSETLYTEELNLTKIAEENIRKEKEELENMKSFRDKVKEQLFLALDQNE* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0564 155 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 106 IPR007112 -
Gso20g0564 155 Coils Coil 116 146 - -
Gso20g0564 155 PANTHER EXPANSIN-B3 14 107 - -
Gso20g0564 155 SUPERFAMILY Barwin-like endoglucanases 48 110 IPR036908 -
Gso20g0564 155 PANTHER EXPANSIN-B2-RELATED 14 107 - -
Gso20g0564 155 Gene3D - 31 135 IPR036908 -
Gso20g0564 155 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Gso20g0564 155 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gso20g0564 155 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0564 Gso-Chr20 28771518 28783296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0564 27 106 Expansin Gene Family AT1G65680 60.000 8.14e-25 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0564 - - gmx:102664373 275.789