Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0556 ATGGACACTTTCATGAATGAATTTGATCTAGATGGAAACCACATTGGGATAGTCACAACAAGCATCACAAATCCACTTGCATCTGAGAGTCTCAATAGCTCTGGCATTGACCTCAAAAGTGGAAGAGACATTGAGGTCAAAATTGACTATGATGGATGGAGTAAAATGATTTTTGTCTCTGTGGGATACTCTGAAAGCCAATTGAAGAGTGTCCTTAACCATTCAATTAACCTACCAGACATAGTTCCAAGCTCCATTTATGTAGGTTTCACAGCCTCCACAGGCAACACTTTTCCCGAAAGCCACCAAGTCCTCAATTGGGTATTCACATCAGTGCCACTGCCTATTCTTTCAGCTGAACACACTAAAGTTGGCACCATCAAGACCATATTGGTAGTTGTCGCGGTATGCTTATTTCCTTTCATTTGGATAGCTGCTTCTTTGAGGAGAAGATATACGAGGGCTAAAAAGAAAGGGGATATAGAAAGCCTATCAAAGAAGGCTGCAGATATCGCCGAGGTGTTCACTTACAAGCAACTATCAAGGGCTACATGCAACTTCAGCCAGGAAAATCTTTTGGGAAGAGGTGCATTTGGTAGTGTTTATAAAGGTATCATATTAGACTCTGGAAAAACTGTAGCAGTAAAGAAGATTTCAGCAACTTCTAAGCAAGGTGAAAGAGAATTCTTAGCTGAAATATGTACCATAGGGCGTCTTAGGCACAAAAACTTAGTGAAGCTCCAGGGGTGGTGCAGTGAAGGCAATAATCTTCTCTTGGTTTATGACTACATGCAAAATGGAAGCCTTGATCACTTTATAGGCAAGGGCAGTCTGAACTGGCAAACCAGGCACAAGATATTGACAGGATTGGCATCAGCACTACTTTACCTTCATGAAGAGTGTGGAAACCCTTTTGTTCACAGAGATGTTAAGCCTAACAATGTCATGCTGGACTCTAATCACGATGCTCATTTGGGAGATTTTGGGTTAGCAAGATTACTCAAAAATGAAGGTTCAGTGACTACAAATCTAAATGGAACTCTAGGATATTTGGCTCCTGAACTAAGCTTTACAGGGAGAGCTACACCTGAATCAGATGTGTATAGCTTTGGCATGGTAGTTCTTGAGGTCACATGCGGGAAAAGGTTAAACTGGCTTAAGCAAGGGAACAGTTTTGTAGATTCTGTGTGGAATTTGCATTCTCAAAATGCATTGCTGGAGTGCGTTGACCAAAGACTAGAGAACAAATTTGATGAGGAAGAAGCTAAAAGGGCATTGATGGTTGGATTGGCATGTATGCATCCTGATTCCTTGTTCAGGCCAAGGATGAGAAAAGTGGTGAACATTTTTCAGAACCCAAATGAACCTTTAATGGAATTACCAGGAGTGAGGCCAACTGGAGTTTATGTATCAGTTTCTTCTAGTACATCAGCCTCCAACTCTAGCTCTAGAGGTGAGTTACAGATCCAATCATCCACAAAATCATCAGATGGAAAATTCAATTATGTGTGA 1512 0.4114 MDTFMNEFDLDGNHIGIVTTSITNPLASESLNSSGIDLKSGRDIEVKIDYDGWSKMIFVSVGYSESQLKSVLNHSINLPDIVPSSIYVGFTASTGNTFPESHQVLNWVFTSVPLPILSAEHTKVGTIKTILVVVAVCLFPFIWIAASLRRRYTRAKKKGDIESLSKKAADIAEVFTYKQLSRATCNFSQENLLGRGAFGSVYKGIILDSGKTVAVKKISATSKQGEREFLAEICTIGRLRHKNLVKLQGWCSEGNNLLLVYDYMQNGSLDHFIGKGSLNWQTRHKILTGLASALLYLHEECGNPFVHRDVKPNNVMLDSNHDAHLGDFGLARLLKNEGSVTTNLNGTLGYLAPELSFTGRATPESDVYSFGMVVLEVTCGKRLNWLKQGNSFVDSVWNLHSQNALLECVDQRLENKFDEEEAKRALMVGLACMHPDSLFRPRMRKVVNIFQNPNEPLMELPGVRPTGVYVSVSSSTSASNSSSRGELQIQSSTKSSDGKFNYV* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0556 503 Pfam Legume lectin domain 1 112 IPR001220 GO:0030246
Gso20g0556 503 MobiDBLite consensus disorder prediction 474 503 - -
Gso20g0556 503 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 2 483 - -
Gso20g0556 503 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 112 IPR013320 -
Gso20g0556 503 Gene3D Transferase(Phosphotransferase) domain 1 264 458 - -
Gso20g0556 503 Gene3D Phosphorylase Kinase; domain 1 146 263 - -
Gso20g0556 503 ProSiteProfiles Protein kinase domain profile. 187 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0556 503 SUPERFAMILY Protein kinase-like (PK-like) 173 480 IPR011009 -
Gso20g0556 503 SMART serkin_6 187 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0556 503 PANTHER - 2 483 - -
Gso20g0556 503 Gene3D - 1 114 - -
Gso20g0556 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Gso20g0556 503 ProSitePatterns Protein kinases ATP-binding region signature. 193 217 IPR017441 GO:0005524
Gso20g0556 503 Pfam Protein kinase domain 188 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0556 Gso-Chr20 27984909 27987406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0556 9 466 Receptor kinase-like Gene Family AT5G55830 40.873 2.68e-106 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso20g0556 Pkinase 9.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0556 - - gsj:114402994 992.645