Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0543 ATGGGAAACACATGTGTTGGTCCAAGCATTTCAAAAAATGGTTTTGTTCAATCAGTTTCTGCGGCGATTTGGCGGTCCCAATTGCCTGAAGATTCAGTGTCTAATAGAGAATCTGTAAAAGAGGAAGCAACTAATGTTCCCGAATCTCCCTTGCCTGTCCAAAACAAACCTCCTGAGCAGATAACTATGCCGAAACCAGAAGCCAAACAAGAGGGAAAATCAGAAATAAAACCGGAACAGGATAAGAAGAAACAGAAGAAACGTGGTTCGGTGAAGAGAGTTTCTAGTGCAGGGCTTCGTGTTGATTCTGTGTTGCAAAGAGAGACAGATAATTTCAAGGAGTTCTTCACTCTTGGGAGAAAACTTGGACAGGGTCAGTTCGGGACAACATTCTTGTGTGTGGAGAAGGCAACAGGACAGGAGTATGCCTGTAAATCTATTGCAAAGAGGAAGCTCGTCACCGATGATGATGTCGAGGATGTGAGAAGAGAAATTCAGATAATGCACCACTTGGCTGGGCATCCTAATGTTATATCCATCAAGGGTGCATATGAGGATGCCATGGCTGTCCACGTTGTGATGGAACTATGTGCAGGTGGAGAGCTTTTCGATAGGATTATTCAGCGTGGGCATTATACCGAGAGACAGGCAGCGGAGCTTACTAGGACTATAGTTGGGGTTGTGGAAGCTTGCCATTCTCTTGGTGTTATGCACAGAGACCTTAAACCTGAGAACTTTCTCTTCATCAATCAGCACGAGGATTCACTTCTCAAAACCATTGACTTTGGATTATCTGTCTTCTTTAAGCCAGGTGATATATTTAATGATGTGGTGGGCAGCCCATACTATGTTGCCCCTGAAGTTTTGCGAAAGCGTTATGGTCCTGAGGCAGATGTTTGGAGTGCTGGTGTTATCCTTTACATTCTTTTGAGTGGAGTACCTCCATTTTGGGCTGAAAATGAACAAGGAATATTTGAACAAGTTCTGCGTGGTGATCTTGACTTTTCTTCTGATCCCTGGCCTTCAATTTCTGAAAGTGCAAAAGATTTAGTAAGGAAAATGCTTGTTCGCGACCCTAGAAGGCGGCTGACTGCACATCAAGTATTATGTCATCCTTGGATTCAAGTTGATGGTGTAGCTCCTGACAAACCACTTGATTCTGCTGTATTAAGTCGCTTAAAGCAATTTTCTGCTATGAACAAGCTCAAGAAAATGGCCCTTATAATTATCGCAGAGAGCTTATCTGAAGAAGAAATAGCTGGCTTAAAAGAAATGTTCAAGATGATAGATGCAGACAACAGTGGTCAAATCACTTTTGAAGAACTTAAAGCTGGTTTGAAAAGAGTGGGTGCTAATCTTAAGGAGTCTGAAATTTATGATTTAATGCAAGCGGCTGATGTTGATAACAGTGGGACAATTGATTACGGCGAGTTCCTTGCTGCAACATTGCACCGCAACAAAATTGAAAGAGAAGATAATCTATTTGCAGCCTTTTCTTACTTTGATAAAGATGGAAGTGGCTATATTACTCAGGAAGAACTTCAACAGGCTTGTGATGAGTTTGGCATAAAAGATGTCCGCCTGGAGGAGATAATCAAGGAAATTGATGAAGACAATGATGGACGCATAGATTACAATGAGTTTGTGGCTATGATGCAGAAGGGAAATCTTCCAGCGGTTGGTAAGAAGGGCCTAGAAAATAGCTTCAGCATTAAATTCAGGGAAGCATTAAAATTGTAG 1740 0.4195 MGNTCVGPSISKNGFVQSVSAAIWRSQLPEDSVSNRESVKEEATNVPESPLPVQNKPPEQITMPKPEAKQEGKSEIKPEQDKKKQKKRGSVKRVSSAGLRVDSVLQRETDNFKEFFTLGRKLGQGQFGTTFLCVEKATGQEYACKSIAKRKLVTDDDVEDVRREIQIMHHLAGHPNVISIKGAYEDAMAVHVVMELCAGGELFDRIIQRGHYTERQAAELTRTIVGVVEACHSLGVMHRDLKPENFLFINQHEDSLLKTIDFGLSVFFKPGDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLSGVPPFWAENEQGIFEQVLRGDLDFSSDPWPSISESAKDLVRKMLVRDPRRRLTAHQVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALIIIAESLSEEEIAGLKEMFKMIDADNSGQITFEELKAGLKRVGANLKESEIYDLMQAADVDNSGTIDYGEFLAATLHRNKIEREDNLFAAFSYFDKDGSGYITQEELQQACDEFGIKDVRLEEIIKEIDEDNDGRIDYNEFVAMMQKGNLPAVGKKGLENSFSIKFREALKL* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0543 579 SUPERFAMILY Protein kinase-like (PK-like) 115 375 IPR011009 -
Gso20g0543 579 Gene3D - 399 558 - -
Gso20g0543 579 ProSiteProfiles EF-hand calcium-binding domain profile. 489 524 IPR002048 GO:0005509
Gso20g0543 579 ProSitePatterns EF-hand calcium-binding domain. 536 548 IPR018247 -
Gso20g0543 579 CDD EFh 422 481 IPR002048 GO:0005509
Gso20g0543 579 CDD STKc_CAMK 115 373 - -
Gso20g0543 579 ProSitePatterns Protein kinases ATP-binding region signature. 122 149 IPR017441 GO:0005524
Gso20g0543 579 ProSitePatterns EF-hand calcium-binding domain. 430 442 IPR018247 -
Gso20g0543 579 Gene3D Phosphorylase Kinase; domain 1 118 201 - -
Gso20g0543 579 SMART efh_1 493 521 IPR002048 GO:0005509
Gso20g0543 579 SMART efh_1 421 449 IPR002048 GO:0005509
Gso20g0543 579 SMART efh_1 457 485 IPR002048 GO:0005509
Gso20g0543 579 SMART efh_1 527 555 IPR002048 GO:0005509
Gso20g0543 579 SMART serkin_6 116 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0543 579 Pfam EF-hand domain pair 492 553 IPR002048 GO:0005509
Gso20g0543 579 Pfam EF-hand domain pair 422 482 IPR002048 GO:0005509
Gso20g0543 579 ProSitePatterns EF-hand calcium-binding domain. 466 478 IPR018247 -
Gso20g0543 579 PANTHER SERINE/THREONINE-PROTEIN KINASE 68 563 - -
Gso20g0543 579 MobiDBLite consensus disorder prediction 27 94 - -
Gso20g0543 579 Pfam Protein kinase domain 117 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0543 579 CDD EFh 494 553 IPR002048 GO:0005509
Gso20g0543 579 Gene3D Transferase(Phosphotransferase) domain 1 202 398 - -
Gso20g0543 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Gso20g0543 579 MobiDBLite consensus disorder prediction 66 85 - -
Gso20g0543 579 ProSiteProfiles EF-hand calcium-binding domain profile. 417 452 IPR002048 GO:0005509
Gso20g0543 579 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 68 563 - -
Gso20g0543 579 SUPERFAMILY EF-hand 414 554 IPR011992 -
Gso20g0543 579 ProSiteProfiles Protein kinase domain profile. 116 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0543 579 ProSiteProfiles EF-hand calcium-binding domain profile. 453 488 IPR002048 GO:0005509
Gso20g0543 579 ProSitePatterns EF-hand calcium-binding domain. 502 514 IPR018247 -
Gso20g0543 579 ProSiteProfiles EF-hand calcium-binding domain profile. 527 558 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0543 Gso-Chr20 27367393 27375257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0543 1 579 EF-hand Containing Proteins AT5G04870 76.948 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso20g0543 Pkinase 5.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0543 K13412 - gmx:100797449 1107.43