Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0539 ATGGAGTTTAAGCAACATGAGGAAACTGAGTTGAGGATGCTCGCAGCAACAGCGAGTTACAATGCCTTTGGAATACCGCCCTCAAGTCAAGGCGAAGAGGAGCCAGTGGCGGCGGCGATTCCAATGACCCCAACACCACCCACCCTGGCTCAAAAAAATGACAATGAGAAGTATCATGAGTGCCTTAAGAACCACACCATCAAAACTGGCATCCACACACTTGATGGATGCATCAAGTTCTTGCCTCTAGGCGAGGAGGGAACCCTGGATGCGCTAAAATGCCTAGTGTGCAACTGCCACCGAAACTTCCATCGTAAGGAGACCCCCAATGACACCTACCTGGTGCCTTACTACCGCCACTCGCCGTTGCCGTTGGCAGCGTACTATGGGGAGCAGGTGGGCTACCCCCATGTGCAAGGGCAACAATGCACCACACTGGCACTCCCCTCCAGGTCAAGGGGCAGTGGTGGGGCCCAGTCCTCGAGGGAGGACATGGAAGCAGTGTCAGACCCAACGAGTGGTGCCACTCCTCATGGCGGGTCCAGCAAGAAGCGTTTCAGGACTAGGTTCACCCAAGAACAAAAGGGGAAGATGTTGGCCTTTGCAGAAAAGCTTGGCTGGAGGATTATGAAGCACGATGAGAGTGTCGTGCAGGAGTTTTGTGCCCAAACTAACATCCAACCTCGTGTGCTTAAGGTGTGGGTGCACAACAACAAGCACACCTTAAGTAAGAAGCTCTAG 741 0.5344 MEFKQHEETELRMLAATASYNAFGIPPSSQGEEEPVAAAIPMTPTPPTLAQKNDNEKYHECLKNHTIKTGIHTLDGCIKFLPLGEEGTLDALKCLVCNCHRNFHRKETPNDTYLVPYYRHSPLPLAAYYGEQVGYPHVQGQQCTTLALPSRSRGSGGAQSSREDMEAVSDPTSGATPHGGSSKKRFRTRFTQEQKGKMLAFAEKLGWRIMKHDESVVQEFCAQTNIQPRVLKVWVHNNKHTLSKKL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0539 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 245 - -
Gso20g0539 246 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 57 107 IPR006456 -
Gso20g0539 246 MobiDBLite consensus disorder prediction 148 186 - -
Gso20g0539 246 MobiDBLite consensus disorder prediction 24 46 - -
Gso20g0539 246 Gene3D - 168 245 - -
Gso20g0539 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 47 245 - -
Gso20g0539 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 107 IPR006456 -
Gso20g0539 246 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 183 239 IPR006455 -
Gso20g0539 246 Pfam ZF-HD protein dimerisation region 56 108 IPR006456 -
Gso20g0539 246 SUPERFAMILY Homeodomain-like 170 244 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0539 Gso-Chr20 27292189 27293281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0539 57 243 ZF-HD Transcription Factor Family AT4G24660 49.215 3.92e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso20g0539 ZF-HD_dimer 7.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0539 - - gmx:100817719 486.878