Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0535 ATGACAACAGCAGAAGAAACTTCAAACTTGGATCTCATACGCCAACACCTATTAGGGGAAAATATCATCTCAGACTCCTCCTTTTTCTCCAATCTCCTTCATCATCCTATGAAACTTGAAGCACCCTCATCACCAGAATTTGATTTCACCTCATATATCTCAGACAACACAAGCTTTTTCACTTTCCTTGAAGGCTATGATTTGATGGCAGACATGAAATTTGTTGATTCAGACAACACCATCCCTTCAAAGGAGGTTAAGAAATGCAATATTTCTCCTGAACCATTGGTGTCATCAAAAGAGAAGCCAAAGAAGTTAGAATACGATAAGGCAAAGCGTTATAGGGGAGTTAGAAGAAGGCCTTGGGGAAAATTTGCTGCTGAAATCCGTGACCCTACAAGGAAAGGGACAAGGGTTTGGCTTGGAACCTTTGACAGTGAAATTGATGCAGCTAAGGCCTATGATTGTGCTGCTTTCAAGATGAGGGGGCAGAAGGCTATTCTGAACTTCCCTCTTGAGGCTGGACTGTCTGATCCTAAGCCTAACAGTTGTGGCAGGAAAAGGAGAAGAGAGAGCCATGATCATGAATTGGAGCTGCCACAAGTCCAAGTTCATCATGGTGTTTCCTGA 630 0.4286 MTTAEETSNLDLIRQHLLGENIISDSSFFSNLLHHPMKLEAPSSPEFDFTSYISDNTSFFTFLEGYDLMADMKFVDSDNTIPSKEVKKCNISPEPLVSSKEKPKKLEYDKAKRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDSEIDAAKAYDCAAFKMRGQKAILNFPLEAGLSDPKPNSCGRKRRRESHDHELELPQVQVHHGVS* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0535 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 194 - -
Gso20g0535 209 CDD AP2 112 171 IPR001471 GO:0003700|GO:0006355
Gso20g0535 209 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Gso20g0535 209 PRINTS Ethylene responsive element binding protein signature 153 173 IPR001471 GO:0003700|GO:0006355
Gso20g0535 209 SUPERFAMILY DNA-binding domain 113 173 IPR016177 GO:0003677
Gso20g0535 209 MobiDBLite consensus disorder prediction 182 201 - -
Gso20g0535 209 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 194 - -
Gso20g0535 209 SMART rav1_2 113 177 IPR001471 GO:0003700|GO:0006355
Gso20g0535 209 Pfam AP2 domain 113 163 IPR001471 GO:0003700|GO:0006355
Gso20g0535 209 MobiDBLite consensus disorder prediction 177 209 - -
Gso20g0535 209 Gene3D AP2/ERF domain 112 173 IPR036955 GO:0003700|GO:0006355
Gso20g0535 209 ProSiteProfiles AP2/ERF domain profile. 113 171 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0535 Gso-Chr20 27102555 27103526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0535 1 201 AP2-EREBP Transcription Factor Family AT5G07580 42.523 3.45e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso20g0535 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0535 - - gmx:100305726 429.869