Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0534 ATGCAAAGTTCAATCTCACAATCTGAGATTTGCATCACTGATTACCTTCTACCCCAAGAAGTTCCATCTCAATTTCAATTTCCAGATATGAGCAACAATAACATACCAATGAACCATACCAACCTTCAAATGCCTCAAATCACATCTTTCTCCAAGCCTCCAAGGTCCTCATCAAATCTAAGCAACCGCAAACCGTCCTTGAGAAACATCACAATCCCTTCCATAACCTCAGGTCTTACAACAACTATGTCACAAACAATAACAACAACAACAACAATAGCTACAACCATGTATAACAACAATCAAGTTACTTCTTCTTCAGATGAAACCAACAACATCAAAGAGAACAAGCACTATAGAGGGGTTAGAAGAAGGCCATGGGGCAAGTATGCTGCAGAAATCCGTGACCCTAATAGAAAAGGCTCAAGGGTGTGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCCAAGGCTTATGACAAAGCTGCTTTCAAGATGAGAGGGAGCAAAGCCATATTGAATTTCCCTTTGGAGATTGGAGAGTCAGAGGAATCAGTCTCAAGCTGCATCAAGGTTGGTGTGAAGAGGGAAAGAGAGGAAGAGAGTAAAAGCAACAACTATGAGAAAAGTGAGTTTAACAACAATAATAATAGTAATAAGCATGTGAAGAAAGAAGAGTGTTCTCCCAAAGCTGTTTGCCCTTTGACTCCATCATGTTGGAAAGGCTTTTGGGACACTGATGTTATGGGAACTATCTTTAGTGTGCCTCCTTTGTCACCACTATCTCCACTAATGGTTGTTTGA 804 0.4092 MQSSISQSEICITDYLLPQEVPSQFQFPDMSNNNIPMNHTNLQMPQITSFSKPPRSSSNLSNRKPSLRNITIPSITSGLTTTMSQTITTTTTIATTMYNNNQVTSSSDETNNIKENKHYRGVRRRPWGKYAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFKMRGSKAILNFPLEIGESEESVSSCIKVGVKREREEESKSNNYEKSEFNNNNNSNKHVKKEECSPKAVCPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMVV* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0534 267 SUPERFAMILY DNA-binding domain 118 178 IPR016177 GO:0003677
Gso20g0534 267 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 251 - -
Gso20g0534 267 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 11 251 - -
Gso20g0534 267 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Gso20g0534 267 PRINTS Ethylene responsive element binding protein signature 158 178 IPR001471 GO:0003700|GO:0006355
Gso20g0534 267 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Gso20g0534 267 Pfam AP2 domain 118 168 IPR001471 GO:0003700|GO:0006355
Gso20g0534 267 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Gso20g0534 267 CDD AP2 117 176 IPR001471 GO:0003700|GO:0006355
Gso20g0534 267 Gene3D AP2/ERF domain 117 178 IPR036955 GO:0003700|GO:0006355
Gso20g0534 267 MobiDBLite consensus disorder prediction 45 73 - -
Gso20g0534 267 MobiDBLite consensus disorder prediction 200 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0534 Gso-Chr20 27078786 27080195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0534 34 260 AP2-EREBP Transcription Factor Family AT5G51190 45.064 6.58e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso20g0534 AP2 5.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0534 K09286 - gmx:100795866 427.172