Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0532 ATGGGCGTTGAGAACTACCACGTCATCGAGCTCGTCGGCGAGGGTTCCTTCGGGAAGGTATACAAGGGAAGGCGCAAGCACACGGGACAGACCGTCGCGATGAAGTTCATAATTAAGCACGGGAAGACCGAGAAGGATATTCACAATTTAAGACAAGAAATCGAGATCTTAAGAAAGTTGAAGCATGGAAATATTATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTTGTTACAGAATTTGCACAAGGTGAGCTATTTGAGATTCTTGAGGATGATAAGTGCCTTCCGGAAGAGCAAGTTCAAGCAATTGCAAAACAATTGGTAAAAGCCTTACATTATTTGCATTCCAATCGGATCATCCATCGCGATATGAAGCCCCAAAATATTCTAATTGGTGCTGGATCTGTTGTCAAGCTTTGTGATTTTGGGTTTGCACGTGCAATGTCCACAAATACAGTTGTTTTGCGATCTATAAAAGGCACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACTGTATGAGTTATTTGTAGGCCAACCTCCATTCTACACAAATTCTGTGTATGCTCTCATCAGACACATTGTTAAGGATCCTGTTAAATATCCGGATCGCATGAGTCCAAATTTCAAAAGCTTTTTAAAGGGTTTGCTTAACAAGGCACCAGAAAGTCGACTAACTTGGCCGGCTCTTCTTGAACACCCATTTGTTAAAGAAAGCTATGATGAACTCGAGGCCAGGGAATTGCGAGAGATAAATGGTTCACACATGCACAGTGATGCAGCACGGGTGGTTGAAGGAAAAACCATTCAAACTCTGACAACAGGTATGGAAGCGCATATTGCTTCACCGCCTCAGAGTGCAGTTCAGTTAAATAGTCCTATCTTAGATAGAGCCAATTCTTCAGTGCTTGATGAGTCCCCAGTATTTTCAAATCAAAATGTAGGAGAGTCAGGCTGCCAAAGATTGGACAGACTTGAAAATAACTCTCGCACAGTCAACAGTGCAAAACTAATTGGCCAAGACAATGAAGCATTGGGACATATTCTGCTACCACTGAAAAAATGGTCAAAAGGATCTCAAAATATTTGCAGTGATCAAGGTGTTCCTGAATCAAACCAGTCATTGAGGATTCTCTCAAACCTAGTTGCAGCTGGTGCTTTCAGTTCTAGTGGACTAATAGATGAACTAATACGAGAGCTCCTAGTGTTTACTGGATCTGTTATTGCCATGAAATCCTCCGAAGTTACTGACTTGATGGCAAAGAGTTTCTCCATCACTAAAATTTTGCTCGATAATGGTGGAAGTTGCACTTCAAGCTCTTATCTAAGTCACTGGGTTGAATTTGTTGAGATCTATTCTCAGGTTGTAACTTCAAATAATGATGCATCTGGAAGAGTTCTGTATGAATCTAGTGCTTGCATTACAGTCATGCTGTCTAGAGTTGCTCAGGTGCTTAGATCATCTCCTAAAATTTCAGGCCAAGAGAAACTGAATGAAACTGCTAACCGAATTTTAGAGCATGCAAAAACAACGGGTTTAGTAGACAATTTGTGTCTGTGTTTAGCCACTTCAGGATCGAGTCTTATTACAGGTTCTTCCAATATGCTACGGGCTGCTTCTGAAGCATGCAGAGCTGTCTGGTGTTTGATTAATGCACTGGATATACTTTTTATGAAGAAAAGTGCCATTCTGTTTCCCATTAATGCTTTACAGAGTCATTCTTTGCATAGGATGGAAGTTGTGCATCATGAGCAAGATCTCTTGGATAAAGCAGATTCAACTAAAGTTGTTGATGCAATGACCAGAGCATTCCTGAGATCTAAAGCTGTTCTGGTTGCTGTTTACTATTGTTTTCACCAACAACTTGAGTCTGCAATGAATTGTGGTCTTCAGCTTTTGTCAAGATGCTGTCTACATAACAGAATTGTTCCTGCTCTCCTTTGTGGTCTTCCCAGTTCCCTTCCCGTGACTACTGTTGTTAGTGGTGGTGGTGATGGAACTATTGTTTCAGAAGTTTTCACTGTCTTATCATTATGCAGTTCCCCTGCTAACAAAGACACACAAAGTGTAGAACCAAGTAATGCCAAGTGCAAATTAACAAATCCTTCTGCTCTGGTTCGTCATTCATGTCTCCTTGTTGCAGTAATTGCTCAGTGTTTGAAGTCATCTGGAAGAAATTCAGCAATTTTTATGCTCACTACCTCACCAAAGAAGCAGCTTGCTCGACTATCAGTGTTTGCTCACCAAATTTCTTCTGATGATAAAATAAAAGCCTCTATTGAGCCTCAAAGTGCATCAGCTATGTTGGCTCTGGCATCCATTCTATCCCTTGAATCAGGGGCTTTGGTTGAGTCTCCAATATCTGAAATTGCTTTGCCTTTAATTCCTCGAACTTCTAAACTAAGTGACCATCTTAAATTTTCATCTGGCAATGTAAATGAATCGGACCCTTGCAACATCAGTGGGAAGCTCTCATATTGGCAAGGGGTAAGAGATGGGTGTGTTGGTCTTTTAGATTCCAGACTCAAGTGGGGAGGACCATTAGCTGTTCAGCAGTTGTGTGCAAGTGGTACTCCTCTACTTCTTATGGGCCTATTAGGCAATGATGTTTTAAATGCTTCTCATGGAAATGACCATGTAAATGATAGAGTTGGATTGTCTCCTATTGGTGTTGTATGGACAATTTCATCATTATGTCATTGTCTTTCTGGTGGTGCTTTGACTTATCGTCAAATTTTGATTAGGAATGAACATATTAAACTCTTTTCCAACTTGATATGCGACGTTCATATCAATTTGGTAAAATGCTGGATCGGACCTGGTGGAGGGAGAGCAGGAGTCAGAGATCTAATAAATGCAGTGATAGATCTCTTAGCATTTCCTTTTGTTGCTCTGCAAAATGCACCTGGCTTGCCATCAGCCACTGCTTCTGTCAGCAGTGGGTTTCTTCTTAATATTGGCTCTCCTGGTCAGAGAGTATGCATGGAAGATAAGGGTATAGTTAAGGCAATCGAAGAAGACATAGGAAAATATATTAAGATTCTTGTAGAGGTGGGTGTGCCTGGTATTATCCTTCGATGCCTAGATCATATGGATTTGAATGATTTGGGCAGGCCTGTTGCTTTTCTGGCTAAAATGGTATGCCACCGACCTTTAGCAATCCAACTTGTTAGTAAAGGTCTTCTGGATCCAAATAAGATGAGAAAGTTGTTTGACTGTTCGGCCCCAAAAGAGGTCACACTGGATGCTCTTATGATTATTTCTGATCTTGCTCGCATGGACAAGGGATTTTATGAGTACATTAAAGGTGCTTCTGTTTTGGAGTTCTTGAAAGATTTTCTTTTGCACGAGGATCCCAATATGCGTGCCAAAGCTTGCAGTGCTCTTGGAAACATGTGTCGTCATAGCGCCTATTTTTATAGTTCACTTGCAAGACATCAAATTGTTGGTATCCTTATTGAAAGATGTTCTGATCCAGACAAACGAACACGGAAATTTGCTTGTTTTGCTATTGGAAACGCGGCCTACCACAATGACTTGTTGTATGAAGAGCTGAGGAAATCTATTCCTCAATTGGCAAATTTGTTACAAATGGCAGAGGAAGACAAGACTAAGGCAAATGCAGCAGGTGCACTTAGCAATCTGGTTCGCAACTCTGACAAGCTTTGTGAAGACATTGTGTCTAACGGAGCGGTTCAGTCTCTGCTGAAACTAATTTCCGATTGTGCGGTATCAGCGCTCAATCCAAGCAGAAATGATTCAGGAAATGAATCTCCTCTAAAGATAGCTCTCTTTTCCCTAGCAAAGATGTGTGCACATCCACTCTGCAGACAGTTCATCCGTTCATCACCATTGTTCCCTGTGATTGGAAGGCTTCAGCAGTCTCCAGAATCATCCATTGCCAAATATGCCTCCGCGATCATTAGCAAAGTTGCTGAACCTTGA 4005 0.414 MGVENYHVIELVGEGSFGKVYKGRRKHTGQTVAMKFIIKHGKTEKDIHNLRQEIEILRKLKHGNIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDRMSPNFKSFLKGLLNKAPESRLTWPALLEHPFVKESYDELEARELREINGSHMHSDAARVVEGKTIQTLTTGMEAHIASPPQSAVQLNSPILDRANSSVLDESPVFSNQNVGESGCQRLDRLENNSRTVNSAKLIGQDNEALGHILLPLKKWSKGSQNICSDQGVPESNQSLRILSNLVAAGAFSSSGLIDELIRELLVFTGSVIAMKSSEVTDLMAKSFSITKILLDNGGSCTSSSYLSHWVEFVEIYSQVVTSNNDASGRVLYESSACITVMLSRVAQVLRSSPKISGQEKLNETANRILEHAKTTGLVDNLCLCLATSGSSLITGSSNMLRAASEACRAVWCLINALDILFMKKSAILFPINALQSHSLHRMEVVHHEQDLLDKADSTKVVDAMTRAFLRSKAVLVAVYYCFHQQLESAMNCGLQLLSRCCLHNRIVPALLCGLPSSLPVTTVVSGGGDGTIVSEVFTVLSLCSSPANKDTQSVEPSNAKCKLTNPSALVRHSCLLVAVIAQCLKSSGRNSAIFMLTTSPKKQLARLSVFAHQISSDDKIKASIEPQSASAMLALASILSLESGALVESPISEIALPLIPRTSKLSDHLKFSSGNVNESDPCNISGKLSYWQGVRDGCVGLLDSRLKWGGPLAVQQLCASGTPLLLMGLLGNDVLNASHGNDHVNDRVGLSPIGVVWTISSLCHCLSGGALTYRQILIRNEHIKLFSNLICDVHINLVKCWIGPGGGRAGVRDLINAVIDLLAFPFVALQNAPGLPSATASVSSGFLLNIGSPGQRVCMEDKGIVKAIEEDIGKYIKILVEVGVPGIILRCLDHMDLNDLGRPVAFLAKMVCHRPLAIQLVSKGLLDPNKMRKLFDCSAPKEVTLDALMIISDLARMDKGFYEYIKGASVLEFLKDFLLHEDPNMRAKACSALGNMCRHSAYFYSSLARHQIVGILIERCSDPDKRTRKFACFAIGNAAYHNDLLYEELRKSIPQLANLLQMAEEDKTKANAAGALSNLVRNSDKLCEDIVSNGAVQSLLKLISDCAVSALNPSRNDSGNESPLKIALFSLAKMCAHPLCRQFIRSSPLFPVIGRLQQSPESSIAKYASAIISKVAEP* 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0532 1334 Coils Coil 40 60 - -
Gso20g0532 1334 SUPERFAMILY ARM repeat 1027 1331 IPR016024 -
Gso20g0532 1334 Pfam Protein kinase domain 6 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0532 1334 ProSiteProfiles Protein kinase domain profile. 6 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0532 1334 SMART arm_5 1238 1292 IPR000225 GO:0005515
Gso20g0532 1334 SMART arm_5 1198 1237 IPR000225 GO:0005515
Gso20g0532 1334 SMART arm_5 1114 1154 IPR000225 GO:0005515
Gso20g0532 1334 SMART serkin_6 6 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0532 1334 Coils Coil 1202 1222 - -
Gso20g0532 1334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Gso20g0532 1334 ProSitePatterns Protein kinases ATP-binding region signature. 12 39 IPR017441 GO:0005524
Gso20g0532 1334 Gene3D Transferase(Phosphotransferase) domain 1 2 309 - -
Gso20g0532 1334 PANTHER PROTEIN KINASE RELATED 1 1332 IPR045193 GO:0004674
Gso20g0532 1334 Gene3D - 1030 1331 IPR011989 -
Gso20g0532 1334 CDD STKc_STK36 4 256 - -
Gso20g0532 1334 SUPERFAMILY Protein kinase-like (PK-like) 4 311 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0532 Gso-Chr20 26941196 26955746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0532 1 269 AGC Kinase Gene Family AT3G08720 37.906 1.02e-47 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Gso20g0532 Pkinase 4.3e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0532 K06228 - gmx:100813995 2513.41