Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0526 ATGGATAATTCAAAGTCTTCTGGGAGAAGGCATGAAGAATGGTCTCCTACCCCTTTGTCTGACAAGAAAAGGATGGAAGTGTCTGTAAAACACAGGAAGGTCAAACAAGCATTGGCGACGTTTAGAAACTTAGTTGACAAGCTCAATCATCAGTATAAAGCGTCTCAACCTGTGAATTTAATGGCGAAGACTAAAGCTATGATGGAAGCAGCAATGATGATGAGACAAAAGCATCAATGGGAGAACGATAAAAAGCATGTGGGACATGTAGTAGGCATCGAGGTAGGTGACATCTTTCAAAGTAGGGTGGAACTCAATGTCATTGGCCTCCATCGGCAGTTTTGGAATGGTATTGATTATATGGGAACAGGCAAGAACTCGTTGGCCACAAGCATTGTTGTAACCAATCGATACGATAATGCTAGGAAATCCAATGGTACCTTGGTTTACAGTGGTCATGGAGGAAATCCCAATGTTAAGAGTAATGTTTCTATTCAGGATCAGAAGTTGCAAGGGGGAAATTTGGCTCTGAAGAATAGCATGGATACAAAAAGTCCTGTGAGGGTTATACTGAAATTTTGTAAAAAGTTTGAAGTTGGCAGCAATTTCGATTACTTGTATGTTTATGATGGCTTGTATTTAGTGGATAAGATGACTGAAGAAAGAGGGAAACTTGGAAAACTTGTGTTCAAGTTTACACTGAATAGGATTTCAGAGCAACCCCAAAGTTGTGTTGCCCTCAAAGATGATGTTATGGGCAATGATGACAGTTCAAGACAACTTGCAAGTTCTAGGCCAAGAAACAGACACAAATCCAGAGGAAGTGTAGTCCAAAAGGATGTTGTTCGAGTTAACGATCTTTCAAAAGGAAAAGAAAAATTTCCTATTCGGGTGGTGACATTAACAAATTGTGTTCATATACCCAAATCCTTTTACTACATTGTTAAGAGCATCTATTCAGATAAGTTCAACCAGGCAACGATTCCGTGTGGCTGTGATTGTAAAGATGGATGTGTGAACTGTGACAAATGTGTTTGCATTATTAAGAATGGTGGGATAATGGCATATGATTGTAAAAAAAGACTTGCTTCTCCCATGGGATCATTGCTTATTTATGAATGTGGCCCTTCTTGCAAGTGCTCCTCTTCTTGCATCAACCGAGTAAGCCAGCATGGGATCCAGTTCCAACTGGAAATCTTCATGACAGAATTGAAAGGTTGGGGTGTTAGAACACGCTCTTTCATTCCCTCTGGAAGCTTTGTATGTGAGTACATTGGAGAAGTCCGGGACAGTAGACAAAGTGGATTGAGTATAGATGTTGATGATGACTATTTATTTCACACGGGTGTTGGAAAGGGCTTCATCGATGCAACAAAATGTGGAAACATTGGAAGATTTATAAATCATAGCTGTTCTCCGAATCTCCATGTCAAAGATGTTATGTATGATCATGATGACAAGAATCTTCCTCACAAAATGCTGTTTGCTGCAAAGGACATTCCTGCTGGTAGAGAGCTGAGTTTTGATTATAATTCCAAGGGAAAATTTATCAACGATAGGAGTAATAGCTGCTACTGTGGATCACAGGAATGCAATGGTCAGATCTATATTAAAGTTAAACAAAATGACAGGCTGACTGAGGAATTTGGAAGCTTCTAA 1659 0.396 MDNSKSSGRRHEEWSPTPLSDKKRMEVSVKHRKVKQALATFRNLVDKLNHQYKASQPVNLMAKTKAMMEAAMMMRQKHQWENDKKHVGHVVGIEVGDIFQSRVELNVIGLHRQFWNGIDYMGTGKNSLATSIVVTNRYDNARKSNGTLVYSGHGGNPNVKSNVSIQDQKLQGGNLALKNSMDTKSPVRVILKFCKKFEVGSNFDYLYVYDGLYLVDKMTEERGKLGKLVFKFTLNRISEQPQSCVALKDDVMGNDDSSRQLASSRPRNRHKSRGSVVQKDVVRVNDLSKGKEKFPIRVVTLTNCVHIPKSFYYIVKSIYSDKFNQATIPCGCDCKDGCVNCDKCVCIIKNGGIMAYDCKKRLASPMGSLLIYECGPSCKCSSSCINRVSQHGIQFQLEIFMTELKGWGVRTRSFIPSGSFVCEYIGEVRDSRQSGLSIDVDDDYLFHTGVGKGFIDATKCGNIGRFINHSCSPNLHVKDVMYDHDDKNLPHKMLFAAKDIPAGRELSFDYNSKGKFINDRSNSCYCGSQECNGQIYIKVKQNDRLTEEFGSF* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0526 552 SMART G9a_1 83 240 IPR003105 -
Gso20g0526 552 MobiDBLite consensus disorder prediction 1 28 - -
Gso20g0526 552 ProSiteProfiles SET domain profile. 395 511 IPR001214 GO:0005515
Gso20g0526 552 SMART preset_2 284 379 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso20g0526 552 Pfam SAD/SRA domain 86 240 IPR003105 -
Gso20g0526 552 Gene3D - 68 256 IPR036987 -
Gso20g0526 552 SMART set_7 395 517 IPR001214 GO:0005515
Gso20g0526 552 Pfam Pre-SET motif 288 387 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso20g0526 552 ProSiteProfiles Post-SET domain profile. 520 536 IPR003616 -
Gso20g0526 552 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 21 533 - -
Gso20g0526 552 Gene3D SET domain 262 527 IPR046341 -
Gso20g0526 552 ProSiteProfiles YDG domain profile. 88 236 IPR003105 -
Gso20g0526 552 Pfam SET domain 406 511 IPR001214 GO:0005515
Gso20g0526 552 SUPERFAMILY SET domain 277 517 IPR046341 -
Gso20g0526 552 ProSiteProfiles Pre-SET domain profile. 330 392 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso20g0526 552 MobiDBLite consensus disorder prediction 255 275 - -
Gso20g0526 552 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 21 533 - -
Gso20g0526 552 SUPERFAMILY PUA domain-like 70 244 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0526 Gso-Chr20 26761705 26765218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0526 66 535 Su(var)3-9 homologs AT1G73100 34.638 5.44e-78 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso20g0526 SAD_SRA 1.6e-42 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0526 - - gmx:100807574 1113.21