Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0517 ATGGGAGGGTACTCTACGAACCCCGCGGACTACAAGCTTCTAGAAGAAATTGGTTATGGCGCCACAGCCACGGTGTACAGAGCGATGTATCTCCCCTTCAACCAACTCGTGGCCATCAAGTCCCTGGATCTCGATCGTTGCAACATCAATCTCGACGACCTGCGTAGGGAGGCCCAAACCATGAGCCTCATCGACCACCCCAACGTGGTGAGGGCCCACTGCTCCTTTGCCGTGGAGCGGAGCCTCTGGGTGGTCATGCCCTTTATGGACCAGGGCTCCTGCCTCCACCTCATCAAGATTGCTCTCTCCCACGGCTTCCAAGAGGACGCTATCGGATCCATCCTCAAGGAGACTCTCAAGGCCCTCCACTACCTTCACCGCCACGGCCACATTCACCGCGACGTCAAGGCCGGCAACATTCTACTCGACACCTCCGGCGCTGTCAAACTCTCCGACTTCGGCGTCGCCACTTGCTTGTACGACGCCGTCGACAGGCAGCGTTGCAGAAATACTTTTGTTGGGACCCCTTGCTGGATGGCTCCTGAGGTGCTGCAACCAGCTGGAAGTGGCTATAATTCCAAGGCTGATATTTGGTCTTTTGGGATTACGGCACTTGAGTTGGCTCATGGCCATGCACCATTTTCAAAATATCCTCCAATGAAGGTTCTTCTAATGACAATGCAGAATGCCCCTCCTGGACTTGATGATCGAGATAAAAAGTTCTCTAAGTCTTTTAAGGAAATGGTTGCTATGTGCCTGGTGAAAGATCAAACAAAAAGGCCATCAGCAGAGAAGTTACTGAAACATTCCTTCTTCAAACATGCTAAGCCTCCCGAGCTCTCTGTAAAGAAATTGTTTGCTGACTTACCTCCTCTTTGGAACTGTGTAAAATCCCTCAAGCTCAAAGATGCAGCACAACTAGCAGTGAAGAAAATGCCTTCTGCAGATGAAGAGGCAATATCTCAGAGTCAATATCAACGAGGAGTTAGTGCGTGGAACTTTGATATTGATGATTTGAAAGCTCAAGCTTCATTGGTGAGGGATGATAATGATAATGCAGAGATGAGGGAAGATGAAAACAAATTTTTCACTAATTACAAGGCTAGTGCAATTGATTCCCAGTCTGGTACTGTCAAAATGAATACAGAGAAATCACCACAGAATAAAATCACATCACTGGTAGGTGCTTTTGACATAAAACAGACTGAGCAAAATGAATACTTGAACAAAAAGGAGAAGAATCTTGAAAGTGATCTCCAGGAACCTGGATTGCCCAGAAATATTATTTGGAAGAGAAATGGGTCAATTATGGAGGCAACAACATCCACTATAGAGAAAGATATAGGTATGAGCCATCAAACCCAAAGTGGGTTACCAGGCACAGTTCTCAGTCATTCTGCATCAGAAAGGAGACGAACATTAGAAAGGCTTGAGAATGGAAATCAGTTATTGGGCGAGAAAAATAACCGTGAAGCGCGACAACCTCCAAGTTTTAGTGGTCCATTGATGCTTCCGACGCGAGCTTCAGCAAATAGTTTATCAGCTCCAATAAAGTCTTCTGGAGGATTCAGAGATTCCTTGGATGACAAGTCTAAGGCTACTCTTGTGCAAATTAAAGGGCGATTCTCTGTAACATCAGAAAATTTAGATCTTGTGAAGGGATCAGTATCACCACTGCGGAAATCTGCCAGTGTTAGTGATTGGATGTTGGATTCCAAACAAATGGCCACTGAAGATTCTGCCACCGACAGTATCTCTGCATCACTTCTTACGACTCACCTTCAAAATCTTTTACAGCAAACATCTATTCAACAGGATCTTATAATGAATCTGTTAAATAGTGTGCAATCTGCTGAAGCAATTGAAGTTTCTCAGAATGGAAAGCTGCCACCATTACCTCGCAGTTCAGAAATCAATGGAAGTGTTGATACAGCAGCTTCAGAGAGGGAACGTCTTCTGCTGCTCAAAATTTTAGAGCTTCAGACTCGGATAATCACTTTGACTGATGAGCTGACTGCTGAGAAGTTAAAATACATGCAGTTGCAACAACAGCTAACTCTCTACAGTCAGGAACAAAATATGGACAAGAGAGAGGAAATTGCATGA 2106 0.4525 MGGYSTNPADYKLLEEIGYGATATVYRAMYLPFNQLVAIKSLDLDRCNINLDDLRREAQTMSLIDHPNVVRAHCSFAVERSLWVVMPFMDQGSCLHLIKIALSHGFQEDAIGSILKETLKALHYLHRHGHIHRDVKAGNILLDTSGAVKLSDFGVATCLYDAVDRQRCRNTFVGTPCWMAPEVLQPAGSGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTMQNAPPGLDDRDKKFSKSFKEMVAMCLVKDQTKRPSAEKLLKHSFFKHAKPPELSVKKLFADLPPLWNCVKSLKLKDAAQLAVKKMPSADEEAISQSQYQRGVSAWNFDIDDLKAQASLVRDDNDNAEMREDENKFFTNYKASAIDSQSGTVKMNTEKSPQNKITSLVGAFDIKQTEQNEYLNKKEKNLESDLQEPGLPRNIIWKRNGSIMEATTSTIEKDIGMSHQTQSGLPGTVLSHSASERRRTLERLENGNQLLGEKNNREARQPPSFSGPLMLPTRASANSLSAPIKSSGGFRDSLDDKSKATLVQIKGRFSVTSENLDLVKGSVSPLRKSASVSDWMLDSKQMATEDSATDSISASLLTTHLQNLLQQTSIQQDLIMNLLNSVQSAEAIEVSQNGKLPPLPRSSEINGSVDTAASERERLLLLKILELQTRIITLTDELTAEKLKYMQLQQQLTLYSQEQNMDKREEIA* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0517 701 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 3 692 - -
Gso20g0517 701 SMART serkin_6 11 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0517 701 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 692 - -
Gso20g0517 701 Pfam Protein kinase domain 11 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0517 701 SUPERFAMILY Protein kinase-like (PK-like) 8 323 IPR011009 -
Gso20g0517 701 CDD STKc_OSR1_SPAK 10 272 - -
Gso20g0517 701 MobiDBLite consensus disorder prediction 451 506 - -
Gso20g0517 701 Gene3D Transferase(Phosphotransferase) domain 1 92 319 - -
Gso20g0517 701 Coils Coil 336 356 - -
Gso20g0517 701 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Gso20g0517 701 Gene3D Phosphorylase Kinase; domain 1 2 88 - -
Gso20g0517 701 ProSiteProfiles Protein kinase domain profile. 11 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g0517 701 MobiDBLite consensus disorder prediction 451 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0517 Gso-Chr20 26404784 26412421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0517 4 685 MAP Kinase Kinase Kinase Kinase AT4G10730 63.203 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Gso20g0517 Pkinase 3.3e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0517 - - gmx:100793223 1349.73