Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0511 ATGACGGAGGTGGCGAGATCAGTGGTGCACGACGTTTTGGGGCAAAGAGTGGTCGACGTGGACCAGCCAATCGTCGATTATATCGTCAACGTCCTCGCCGACGATGACTTCGATTTCGGCCTCGACGGCGAAGGCGCCTTCGATGCCCTCGGCGAGCTCCTCGTCGCCGCCGACTGCGTCGACGATTTCTCCCACTGCCGCTCCGTATGCAGCACGCTGTGCGACAAGTTCGGGAAGCACGGTTTGGTGAAGGAGAAGCCCGCTGTGCGAAGCCTTGCGGCGCCGTTTCGAATGAACGAGGGAATGGACGACGTCCAAGCTCCCAAGAAGAAGCCCGAGCCCGTCGACGGCCCTCTTCTATCCGAACGCGATCGCTTAAAGCTCGAGCGGCGAAAACGCAAGGATGAACGCCAGCGAGAGGCACAATACCAAATACACTTGGCGGAGATGGAGGCAGCACGAGCGGGGATGCCGGTGGTGTGTGTGAGGCATGATAGCAGTGGGGGACCAAACGTGAAGGACATTCATATGGAGAATTTCAACATCTCTGTTGGTGGTCGTGATCTCATTGTGGATGGTTGTGTCACACTTTCATTTGGAAGGCATTATGGTTTGGTAGGAAGGAATGGGACGGGGAAAACCACTTTCCTTAGGCACATGGCTATGCATGCCATTGATGGTGTTCCAAGGAATTGCCAGATACTGCATGTGGAGCAAGAGGTGACAGGTGATGCTACGACTGCTTTGCAGTGTGTCCTCAATGCTGACATTGAGAGGACTCAGCTTCTCGATGAAGAAACTCAGTTAGTTGCCCAACAGAGGGAATTGGAGGACAAAAACGAAAAAGGTGATTTGAATGGAGTGGTCGGTAGGGATGACATTTCAAAAAGGCTTGAGGAAATATATAAGAGGCTTGAACTCATTGATGCTGATTCTGCCGAGGCACGAGCAGCATCAATACTAGCGGGTTTGAGTTTCACTCCTGAGATGCAGAAAAAGGCAACAAAAACATTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCATTGTTTATAGAGCCTGATATATTGCTTCTTGATGAGCCTACGAATCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCTTACTTGGTTAAATGGCCAAAAACATTTATTGTTGTTTCTCATGCTAGAGAATTTTTAAACACGGTGGTTACTGATATAATTCACTTGCAAAACCAAAAGCTGACTACTTATAAAGGGAATTATGATACTTTTGAGAAGACTCGAGAAGAACAAGTTAAAAACCAGCAAAAAGCATTAGAGGCAAACGAACGTGCTAGATCTCATATGCAGACCTTCATTGACAAGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAATCTAGAATCAAGGCTTTGGATCGAATGGGCCATGTGGATGAAATTGTTAATGATCCTGACTACAAATTTGACTTCCCCACTCCAGAAGATAGACCTGGTGCACCGATAATAAGTTTCAGTGATGCATCATTTGGTTATCCTGGGGGGCCCATTCTTTTTAAGAATTTGAACTTTGGGATTGATCTCGACAGTCGAATTGCAATGGTTGGACCCAATGGTATTGGCAAGTCAACTATACTTAAGTTAATTGCTGGGGATCTTCAGCCCAGTTCTGGGACTGTCTTCCGTTCTGCTAAGGTTCGTATAGCAGTGTTCAGTCAGCACCATGTTGATGGACTGGACTTATCCTCAAACCCTCTTCTGTATATGATGCGCTGCTATCCTGGAGTTCCAGAACAGAAGCTTCGAGCTCACTTAGGTTCTTTTGGTGTAACCGGAAATCTTGCACTGCAGCCAATGTATACTTTGTCAGGTGGTCAGAAAAGCAGGGTTGCCTTTGCAAAGATAACTTTCAAGAAGCCACACATAATATTGCTTGATGAACCATCCAATCATCTGGATTTGGATGCTGTTGAGGCGCTTATTCAAGGTCTTGTGCTGTTCCAAGGAGGCATTCTCATGGTGAGTCACGATGAGCATCTCATCTCTGGAAGCGTGGAGGAACTATGGGTTGTATCCGACGGAAGAGTGGCACCATTCCATGGCACATTCCAAGATTATAAGAAGATACTCCAATCATCTTAG 2139 0.4712 MTEVARSVVHDVLGQRVVDVDQPIVDYIVNVLADDDFDFGLDGEGAFDALGELLVAADCVDDFSHCRSVCSTLCDKFGKHGLVKEKPAVRSLAAPFRMNEGMDDVQAPKKKPEPVDGPLLSERDRLKLERRKRKDERQREAQYQIHLAEMEAARAGMPVVCVRHDSSGGPNVKDIHMENFNISVGGRDLIVDGCVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGVPRNCQILHVEQEVTGDATTALQCVLNADIERTQLLDEETQLVAQQRELEDKNEKGDLNGVVGRDDISKRLEEIYKRLELIDADSAEARAASILAGLSFTPEMQKKATKTFSGGWRMRIALARALFIEPDILLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQNQKLTTYKGNYDTFEKTREEQVKNQQKALEANERARSHMQTFIDKFRYNAKRASLVQSRIKALDRMGHVDEIVNDPDYKFDFPTPEDRPGAPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGDLQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSDGRVAPFHGTFQDYKKILQSS* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0511 712 Coils Coil 262 282 - -
Gso20g0511 712 Pfam ABC transporter 519 649 IPR003439 GO:0005524
Gso20g0511 712 Pfam ABC transporter 196 366 IPR003439 GO:0005524
Gso20g0511 712 PANTHER NON-TRANSPORTER ABC PROTEIN 121 711 - -
Gso20g0511 712 ProSitePatterns ABC transporters family signature. 621 635 IPR017871 GO:0005524
Gso20g0511 712 Gene3D - 465 712 IPR027417 -
Gso20g0511 712 Gene3D - 131 447 IPR027417 -
Gso20g0511 712 ProSitePatterns ABC transporters family signature. 338 352 IPR017871 GO:0005524
Gso20g0511 712 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 121 711 - -
Gso20g0511 712 CDD ABCF_EF-3 175 411 - -
Gso20g0511 712 MobiDBLite consensus disorder prediction 100 139 - -
Gso20g0511 712 MobiDBLite consensus disorder prediction 103 139 - -
Gso20g0511 712 Pfam ABC transporter 405 485 IPR032781 -
Gso20g0511 712 CDD ABCF_EF-3 502 694 - -
Gso20g0511 712 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 434 IPR003439 GO:0005524
Gso20g0511 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 704 IPR027417 -
Gso20g0511 712 SMART AAA_5 199 411 IPR003593 -
Gso20g0511 712 SMART AAA_5 527 694 IPR003593 -
Gso20g0511 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 438 IPR027417 -
Gso20g0511 712 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 502 711 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0511 Gso-Chr20 25894981 25905643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0511 464 696 Calmodulin-binding Proteins AT2G36910 26.217 1.78e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0511 K06158 - gmx:100790412 1382.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0511 20 25894981 25905643 Gso13g0025 13 736245 746197 GST