Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0510 ATGAGTCTTCCACAAACTGCAACTAGCCCTCCTCCACATCTGTATCCACAGGAACTTCAGCTTAAGCTTTACCAAGCCTTCATATTCTCAATTCCAATACTCTTCTCCATCATTCTCTTCCTCTTGTTTTACTTGTTCTACCTTAAGAGAAGGGCTTCCTCTCTATCTTCCTCTTCTCACTTGCTTCCAAGGACCATTGCCAATCCACCAACCACCACTCCGTATCATTCCTCACCTTGTCGTTTGGATCTGACCCTCCAATTCCTGGATAAACTTCCAAGAATTTTATTTGATGAGGATTTGCTGGCAAGGGATTCACTATGTTGTGTTTGTCTGGGGGAATTTGAGCTGAAGGAAGAGGTGCTACAGATACCCTATTGCAAGCACGTGTTCCACTTCGAATGCATACATCACTGGCTGCAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACCAAGTTCCTCAACCCAGCACCCCCTATTAATATTATATCATCAGACCCACCCCAGCATGGTGCTATCATTTCGGACTCCCCATTACAATTGCCACCTCAGCCACAAGACCATCAAGAAGAAGTTGTTGGTGCTTCCTCAAATGCTGCTAATTTGTCAAGGGAATGA 636 0.4465 MSLPQTATSPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSHLLPRTIANPPTTTPYHSSPCRLDLTLQFLDKLPRILFDEDLLARDSLCCVCLGEFELKEEVLQIPYCKHVFHFECIHHWLQSNSTCPLCRCSIIPTTKFLNPAPPINIISSDPPQHGAIISDSPLQLPPQPQDHQEEVVGASSNAANLSRE* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0510 211 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 166 - -
Gso20g0510 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 3 166 - -
Gso20g0510 211 MobiDBLite consensus disorder prediction 185 211 - -
Gso20g0510 211 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Gso20g0510 211 SMART ring_2 108 149 IPR001841 -
Gso20g0510 211 SUPERFAMILY RING/U-box 86 160 - -
Gso20g0510 211 Pfam Ring finger domain 108 150 IPR001841 -
Gso20g0510 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 155 IPR013083 -
Gso20g0510 211 MobiDBLite consensus disorder prediction 179 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0510 Gso-Chr20 25761550 25764000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0510 1 211 C3H Transcription Factor Family AT4G10150 34.101 1.77e-38 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0510 K19039 - gmx:100794298 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0510 20 25761550 25764000 Gso13g0028 13 785887 788357 GST