Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0504 ATGGTTTTGGTTGTCTCAGCTAAGGGTTTTACCATGAATATCAAAGGGAAGAATTTTTCTTTGGTTGACAAGTTTCTTTTGGGGTTTGCTTTTCCTCCGTTGCTGGGTTTGACTATGAGAAGAAAAGGTGTTTTGGGTGTTTTGCAGAATGGTGTTGGCCGTTGTTGTGTCATTTTCGTTTGTTTCAGTTTTAAGTTTGAGAGCAAAACTTTTAGTTTTGCTGAGGTTGATTGGGAGAAGCTAAGTTTTTCTTTGGTTGACAATTTTGTTTTGCAGTTTAGTTTTGCTGAGCTTGATCCGGAGAAGCTAAGGGTTTGCGACTATAAAGTTATGGCACGTGTTGCTGATAAAATTAAATTGATAGATGGATCAAGGGAAACTCTTAAGCTTTCTGTAAGGATCACTGATCTTTGGTTCATTGGGATTCTCGGAAAGACTGAACAAGCCGAAATGGTGGTTGTTGATTCTGATGGAGATGAAATCCATGTTGTTTGCAAACAGGATCAGCTGAAGTCTCGCAAGGCTGATTTGAAAGAAAATTTGACTTATGTGATGCATAATTTTAAAGTTATCAAGAATGATGGGAAATTCAGAGTTTGTGATCATGAATATAAATTATATTTTATTGGAGTTACTGTTGTTAGCTTATGTGATATGGAACATTTACCTTTTAGGAAATTCAGATTTGTTGATTTTTCTAGTGTCATTGCTGGTCATTTTAAAATTGGACTCTTGGTTGATGTTATTGGCGTGATTGATGAAGTGGTATTCCGATATGTGTCATCCAAAAATACGAGGGTTGTTTTGAATTTAAAGGATTTGAGTGGACAGGTGCTATCCTATACACTCTGGGAAAATTACTGCTTACAGTTTTTGTCTTATTTGAATGATATTGAAGATGAAAGGCCAATCGTTATTCTCTTGACTCATGCTAGGATTAAGGAAGCGCAGGGATCATATCTGGCATCGGTCAGTAATTCTTTCAAGGTGTCTAAACTCATGATCAATGACCTCGTGCTGGAAATTCAAGAATTTAGAGAGAGCCTTTTAGATTTAGGGATCGAGGTTAGATCAATTTTGGCGCCTATTGGACAAGGGAGTTCACAGGAATTTGTTTGTGTTACTGTCGCCAAGATTACAACTATAGTGATGGACAACTATTCATGGTGCTATCCGGCTTGTGGTCAATGTTATAAAAAAGCTGACATGCAAACTGTGCTGTTCACATGTCCGTGTGGCAAAGAGAATGATCAACCTGTACTAAGGTATCGGGTTGAGGTGATGGTTAATCACAAGGGTGAACAAACCAAATTTTTGATCTGGGATCATGAATGTGCACAGTTAATTGGTCAGACAGCGGATGAAGTCAATAGGCTCAAAATAGAAGATGGGGATGTTGATTTAAATGCCTCTCCTCAAGTACTAGATAGGCTATTGGGTTGTTTCCTTGCATTCAAAGTGAAGGTGCAACCAAGGTTCAGGAATTCTGTTGTTCTTAAATATTCAGATGAATCAGACTTGATCAATGTTGTGCTAGATATGATTCCCGATAGTGAGCCATGTTGCAAGATCGATAATTCAATACTTGAGTTGACCGATCCTATAGAGCTTGAATCTCAACCAGTGTCTATTACCGCTGATCATGATCGGTCAATGCTTGGCTCAAGTGAGCCTACAGAGCTTGAATCTCAATCTGTGTCTGTTATCGGGGATCATGACCCTCTTCTCAAGATTCCATTGACACCAACTAAGCGCGTATCTTCTAATGAGTTGGATAATGAGCGAAAAAAATTTCAAATTTCACCTGCTGAAGTTTCCTCGAACAAATTAGCCAAGCATTCTCAGCTTGAATGA 1854 0.3846 MVLVVSAKGFTMNIKGKNFSLVDKFLLGFAFPPLLGLTMRRKGVLGVLQNGVGRCCVIFVCFSFKFESKTFSFAEVDWEKLSFSLVDNFVLQFSFAELDPEKLRVCDYKVMARVADKIKLIDGSRETLKLSVRITDLWFIGILGKTEQAEMVVVDSDGDEIHVVCKQDQLKSRKADLKENLTYVMHNFKVIKNDGKFRVCDHEYKLYFIGVTVVSLCDMEHLPFRKFRFVDFSSVIAGHFKIGLLVDVIGVIDEVVFRYVSSKNTRVVLNLKDLSGQVLSYTLWENYCLQFLSYLNDIEDERPIVILLTHARIKEAQGSYLASVSNSFKVSKLMINDLVLEIQEFRESLLDLGIEVRSILAPIGQGSSQEFVCVTVAKITTIVMDNYSWCYPACGQCYKKADMQTVLFTCPCGKENDQPVLRYRVEVMVNHKGEQTKFLIWDHECAQLIGQTADEVNRLKIEDGDVDLNASPQVLDRLLGCFLAFKVKVQPRFRNSVVLKYSDESDLINVVLDMIPDSEPCCKIDNSILELTDPIELESQPVSITADHDRSMLGSSEPTELESQSVSVIGDHDPLLKIPLTPTKRVSSNELDNERKKFQISPAEVSSNKLAKHSQLE* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0504 617 Gene3D - 221 351 IPR012340 -
Gso20g0504 617 MobiDBLite consensus disorder prediction 544 566 - -
Gso20g0504 617 SUPERFAMILY Nucleic acid-binding proteins 367 496 IPR012340 -
Gso20g0504 617 Gene3D - 113 217 IPR012340 -
Gso20g0504 617 PANTHER REPLICATION FACTOR A 1, RFA1 121 443 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso20g0504 617 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 121 443 - -
Gso20g0504 617 SUPERFAMILY Nucleic acid-binding proteins 129 218 IPR012340 -
Gso20g0504 617 Gene3D - 352 509 IPR012340 -
Gso20g0504 617 Pfam Domain of unknown function DUF223 150 237 IPR003871 -
Gso20g0504 617 CDD RPA1_DBD_C 367 540 IPR013955 -
Gso20g0504 617 MobiDBLite consensus disorder prediction 541 617 - -
Gso20g0504 617 CDD RPA1_DBD_A_like 129 214 - -
Gso20g0504 617 MobiDBLite consensus disorder prediction 600 617 - -
Gso20g0504 617 CDD RPA1_DBD_B_like 247 349 - -
Gso20g0504 617 Pfam Replication factor-A C terminal domain 377 464 IPR013955 -
Gso20g0504 617 SUPERFAMILY Nucleic acid-binding proteins 227 348 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0504 Gso-Chr20 25459814 25466052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0504 153 433 Core DNA Replication Machinery Family AT2G06510 26.235 2.77e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0504 - - gsj:114401925 1217.22