Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0495 ATGGACAACGCAGCTGCTGAACTTCAAAGTGTGGCAGCAGATCCTGCTCTTCTTCTTCACCATCAGACTTGTGCTGGAAATGGGATTGGTGACAGTACCTCCTTGATTCCAGAATCCTCCAGAAGACCAAGCCTCTCCTCTCTGCAAATACCAGCGTTGTCAGTGGAAAATGCATTATCTTCTTTTAACAAGACAGATGGTCCTATATTGATATCAAGTCCAGGTTCCAGTAGAGGACTGCCCCCAAGGCCAAATTCAGCCAGAGTCATCAAGTCCACTATGAAAACTTTACTCTCTGAAAGGAGCTTTAGGGCTAAGAATTCTTCAATGGATAGTGAAAGGACAGTTCTCATTATTCCTGATGGCTCACCATCAGATGGTCCTGTGGATAATAAGCCTTCGACTTCGCGGTCCCTTTCTCTTAACAAGATTTTGTTCTCTTCCTCAACAAAAGCAGCACATTCATTGCCGGTTACTCCAACTGCAAATTCAGGTCCAGAGAATGTACATGGAAGACATCTAGGGTGTGATTCTGATTTAAGTAAAATGAAAGTAAATCAGCACATGACTCGATCAGTTTCGGTTCCAGTTAATATCAAAACTGCTAATTTAAGGCATACAGATTCTAGAAGGCTGGTTCGTGTAATTTCAGTAAGATCACTACCAGGAACTAGTGGCAGCATTTCAGCTGACAATGCTTCAGGATCAGAGATTGTCAATGAAGATGCTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGAGGGAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTTCCAGTAACACTCTTGAAAATTACTAATCCTCAAACTGTTACTCGGCAGCCATTGAATGCACCAGAACCACAACAGAGAGAAGTAACTTCTTACAGGATATGGCAGGATGTATCAGTACTTGTCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAGCTACTGGTTTCAGATTTGGGCACTCGTGCACTTGCCATTTCATTACCTTTCTCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCTTCAACCATGGTGAGCGGGAGTTACATGTGGGCTTATGCTTGCTTCCAGTTTTCAATTGTCATCCTGTTTGCTCATGTGTTTTATACTATACTTAATGTTAATGCCATCCTCTCAGTCCTTCTCTCCTCATTCACTGGATTTGGGATTGCAATCAGCTTGAATACGCTGCTAACAGAGTATGTTAGATGGAAAACAAGAAGACAGATTCAATCTTCTACGGCACGGCAGCAGCGCCGTGATCATGCACTGCAGTAG 1428 0.4307 MDNAAAELQSVAADPALLLHHQTCAGNGIGDSTSLIPESSRRPSLSSLQIPALSVENALSSFNKTDGPILISSPGSSRGLPPRPNSARVIKSTMKTLLSERSFRAKNSSMDSERTVLIIPDGSPSDGPVDNKPSTSRSLSLNKILFSSSTKAAHSLPVTPTANSGPENVHGRHLGCDSDLSKMKVNQHMTRSVSVPVNIKTANLRHTDSRRLVRVISVRSLPGTSGSISADNASGSEIVNEDASEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVQNLPVTLLKITNPQTVTRQPLNAPEPQQREVTSYRIWQDVSVLVLVSMLAYFCFLEELLVSDLGTRALAISLPFSCVLGLLSSMIASTMVSGSYMWAYACFQFSIVILFAHVFYTILNVNAILSVLLSSFTGFGIAISLNTLLTEYVRWKTRRQIQSSTARQQRRDHALQ* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0495 475 CDD RING_CH-C4HC3_MARCH 254 302 - -
Gso20g0495 475 PANTHER OS02G0165000 PROTEIN 27 471 - -
Gso20g0495 475 Pfam RING-variant domain 254 301 IPR011016 GO:0008270
Gso20g0495 475 ProSiteProfiles Zinc finger RING-CH-type profile. 246 308 IPR011016 GO:0008270
Gso20g0495 475 SUPERFAMILY RING/U-box 250 305 - -
Gso20g0495 475 PANTHER OS02G0165000 PROTEIN 27 471 - -
Gso20g0495 475 SMART ringv_2 253 302 IPR011016 GO:0008270
Gso20g0495 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 310 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0495 Gso-Chr20 24658953 24672553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0495 237 360 C3H Transcription Factor Family AT2G37950 34.109 2.28e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0495 - - gmx:100779396 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0495 20 24658953 24672553 Gso14g0023 14 305500 312455 PCT
Gso20g0495 20 24658953 24672553 Gso2g2638 2 50465976 50472737 PCT
Gso14g0023 14 305500 312455 Gso20g0495 20 24658953 24672553 PCT
Gso2g2638 2 50465976 50472737 Gso20g0495 20 24658953 24672553 PCT