Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0474 ATGGGTCGGTCCAGAGTTGCGTTGCGCTCCGCTGACGATGACCCAAACCACAGATCAAAGAGAAAAAAGGCTGCTCTGAATGTAGAAAATTCAGAAACCTTACCTACAGGCCAAGGAGTAACTACTAGCAAGGTATCTCTCTATCACTGCAATTATTGTAACAAAGATATTTCGGGGAAGATTCGCATCAAGTGTGTTGTCTGTCAAGATTTTGACCTCTGCTTAGAGTGCTTCTCTGTTGGTGCTGAGGTGACACCTCACAAAAGCAATCATCCATATCGGATTATGGATAATCTATCTTTTCCACTTATATGTACAGATTGGAATGCAGATGAAGAGTTGTTACTTCTAGAGGGCATTGAAACGTATGGATTTGGGAATTGGAATGAAGTTGCAGAATATGTTGGAACAAAAACCAAATCTCAATGTATTGACCACTATAATGCTGTATATATGAATTCGCCATGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGGAAGAACAAAGTGGAACTCTGTGCCATGGCGAAGGGACATGAAGCCAAGAAAGAATTTTCTCTGACTGCAGAGCTTACTCTGAAAGAAGAAGCTTTGTTCACTGATCGAATAAACTATGAAGAATCAAAGAATGCAGAAATCAATAATCAAACTATGTCTAGGTTAACCTCAGCATGTGGCAAAGCTTACCCAAGTACAATTAAGAAGGCATCCAACGTGATCCAAAATAATGGTGGAGTTAAGGTGGAAGAGTCTCGAGCAGATTGGAGCATTGGAGAGAAGAAACCTAAATTATCAGGCGAAGATAGGCCTTCTATGACAGATTTGAGTGGATACAGTTTTAAGCGAGAAGAATTTGATGTTGAATATGACAATGATGCAGAACAAGTGTTGGCTGATATGGAATTTAAGGACACTGATACTAAAGCTGAATATGCAATGAAACTGCACGTGCTCCATATCTACTCAAAAAGGTTAGATGAACGGAAGTGCAGAAAGAATTTTATACTTGAAAGAGATTTACTTTATCCTCATACTTTTGAGAAATCTCTCTTGCCTGAAGAGCTTCAAATATGTCAGAATTACAAGGTCTTCATGCGGTTTCACTCAAAAGAAGAGCATCAAGATTTGCTAAAAAATATTATTGAAGAACACAGGCTTGTCAAAAGAATACAAGATTTACAGGGAGCTCGAATTGCTGGTTGTGTAACTGCTGCTGATGCTTATCGATTTATGGAACAAAAGATGACAAAGGAAGCTGAACCAAGTGCTTGTAAAGAAAGCGGTCAGATTGGAACAAGTGCCAAGACATTACTGAGGCCAAATTATCTCAAAGGAGAAGTTGATAGTAGCCCACAGGGACTTCAAAAGGGGATTACAGCTTTATTTGCTGGTGCCAAGGATTCGCCTACTTCCATACAAGCCATCACAAGGTCGCTAGAAGAGTTGGATATTAGTGGATTTGCAGGGGCTGAATTACTATCTGAATCTGAGAAAAAGCTTTGTAATGAGATCAGAATACTACCCTCACACTATCTCAACATGCTGCAGACCGTGTCATTAGAGTTTTCAAAGGGCAGTGTGACCAAGAAATCTGATGCACATGCACTGTTTAAGGTAGAGCCAAGCAAGGTTGATAGAGTCTACGATATGCTTGTGAAAAAAGGAGTTGCGCAGACATAA 1683 0.3993 MGRSRVALRSADDDPNHRSKRKKAALNVENSETLPTGQGVTTSKVSLYHCNYCNKDISGKIRIKCVVCQDFDLCLECFSVGAEVTPHKSNHPYRIMDNLSFPLICTDWNADEELLLLEGIETYGFGNWNEVAEYVGTKTKSQCIDHYNAVYMNSPCFPLPDLSHVMGKNKVELCAMAKGHEAKKEFSLTAELTLKEEALFTDRINYEESKNAEINNQTMSRLTSACGKAYPSTIKKASNVIQNNGGVKVEESRADWSIGEKKPKLSGEDRPSMTDLSGYSFKREEFDVEYDNDAEQVLADMEFKDTDTKAEYAMKLHVLHIYSKRLDERKCRKNFILERDLLYPHTFEKSLLPEELQICQNYKVFMRFHSKEEHQDLLKNIIEEHRLVKRIQDLQGARIAGCVTAADAYRFMEQKMTKEAEPSACKESGQIGTSAKTLLRPNYLKGEVDSSPQGLQKGITALFAGAKDSPTSIQAITRSLEELDISGFAGAELLSESEKKLCNEIRILPSHYLNMLQTVSLEFSKGSVTKKSDAHALFKVEPSKVDRVYDMLVKKGVAQT* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0474 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Gso20g0474 560 SMART zz_5 44 89 IPR000433 GO:0008270
Gso20g0474 560 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Gso20g0474 560 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Gso20g0474 560 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Gso20g0474 560 Gene3D - 102 153 - -
Gso20g0474 560 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Gso20g0474 560 SUPERFAMILY Homeodomain-like 475 557 IPR009057 -
Gso20g0474 560 MobiDBLite consensus disorder prediction 1 33 - -
Gso20g0474 560 Gene3D - 41 96 IPR043145 -
Gso20g0474 560 ProSiteProfiles SWIRM domain profile. 474 560 IPR007526 GO:0005515
Gso20g0474 560 PIRSF Txn_adaptor_ADA2 36 560 IPR016827 GO:0003713|GO:0006357|GO:0035065
Gso20g0474 560 Pfam Zinc finger, ZZ type 48 88 IPR000433 GO:0008270
Gso20g0474 560 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Gso20g0474 560 SUPERFAMILY RING/U-box 48 111 - -
Gso20g0474 560 SMART sant 104 153 IPR001005 -
Gso20g0474 560 CDD ZZ_ADA2 48 96 IPR041983 -
Gso20g0474 560 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 559 - -
Gso20g0474 560 MobiDBLite consensus disorder prediction 1 27 - -
Gso20g0474 560 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 559 IPR034318 GO:0003713|GO:0006357|GO:0035065
Gso20g0474 560 CDD SANT 119 148 IPR001005 -
Gso20g0474 560 Gene3D - 474 559 IPR036388 -
Gso20g0474 560 SUPERFAMILY Homeodomain-like 100 154 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0474 Gso-Chr20 21475954 21504006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0474 1 560 EF-hand Containing Proteins AT3G07740 51.557 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso20g0474 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0474 K11314 - gmx:100779424 966.837