Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0473 ATGGGGTGGGGTGTGATAGAAGAGGAGGGATGGAGGAAGGGACCTTGGACTTCTGAGGAGGACAGATTGCTCATTCTGTATGTCAAGTTCCATGGTAAGGGCAGATGGAACTCTGCTGCTAGGCTTGCAGGACTAAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTACCTGAGGCCAGACCTCGAGAAGGGTCAAATAACACCACAAGAAGAAAGCATAATTCTAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATAAAGAATTATTGGAGGACTCACTTCAAGAAAAAGATAAGGGCTCACTTCAGCTAA 363 0.4628 MGWGVIEEEGWRKGPWTSEEDRLLILYVKFHGKGRWNSAARLAGLKRNGKSCRLRWVNYLRPDLEKGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKIRAHFS* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0473 120 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gso20g0473 120 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 60 IPR017930 -
Gso20g0473 120 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Gso20g0473 120 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gso20g0473 120 PANTHER MYB TRANSCRIPTION FACTOR 4 116 - -
Gso20g0473 120 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 116 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso20g0473 120 CDD SANT 15 60 IPR001005 -
Gso20g0473 120 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Gso20g0473 120 Gene3D - 13 65 - -
Gso20g0473 120 SMART sant 65 113 IPR001005 -
Gso20g0473 120 SMART sant 12 62 IPR001005 -
Gso20g0473 120 Gene3D - 70 115 - -
Gso20g0473 120 CDD SANT 70 111 IPR001005 -
Gso20g0473 120 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gso20g0473 120 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0473 Gso-Chr20 21392086 21392825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0473 8 117 MYB Transcription Factor Family AT3G24310 87.273 3.60e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso20g0473 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0473 K09422 - gsj:114401913 261.151