LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso20g0466	ATGGAAAATCATGGTGCAGTGTCTGAAACCAAGTGTACGTTTGATGTTTTCCTTAGTTTTAGGGGTGAAGATACCCGTCACACATTTACTTGTAAACTCTATGATGCTTTGTGGCTGAAGGGAATTGACACCTTTATGGATAATAAAGAGCTGAAGAATGGAGACAAAATTGGCCCTACTCTTCATAAAGCCATTGAAGAAGCAAGGATTTCAGTTGTTGTCTTGTCTGAAAATTATGCAGATTCTTCATGGTGCCTCGATGAACTTGTCAAGATCCACGAGTGTATGGAGTCAAAAAACCAGCTCGTTTGGCCCATCTTCTACAAAGTGAATCCCTCGGATGTGAGGCATCAGAAAGGAAGTTATGGTGTGGCCATGACTAAGCATGAAACAAGTAATGGAATAGACTTGGAGAAGGTGCACAAATGGAGGTCAACCTTGAATGAAATAGCCAACTTGAAAGGAAAATATTTGGAAGAAGGGAGGGACGAATCCAAGTTTATTGATGATCTTGCTACTGACATTTTCAAAATAGTATCTTCTAAAGATTTATCTAGAGAAATGTTTATAGTCGGACGAGAGTATCGAGTTAAAGAATTGAAATTACTTCTAGATCTTGAGTCTCGTGATATCACTTGCCTGTTAGGGATTCATGGAACTGGTGGAATTGGCAAAACTACACTTGCAAAAGCTTTGTATGACTCCATTTACAAGCAGTTTGACGGTACAAGTTTTCTCAACGTTGGAGAAACCTCAAATCCTAAGACAGACTTAAAACATCTGCAAGAAAAGCTTTTATCAGAGATACTTGAGGACGACAAAATCCACTGGAGAAATATTGAAGAAGGAACCGCAAAAATAGAAAGGAGACTTGGTTTTAAAAGAGTTCTAATAGTTCTTGACAATGTTGATGACATTAAACAGTTGAATAATTTGGCAGGGAAATGTGCTTGGTTTGGTCCTGGGAGCAGGATCATCATAACAACGAGAGATAAACATTTGCTAGATCTTGGTGAGGTTGAAAAGAGATATGAAGTGAAAATGCTAGATGAGAAAGAGTCTCTAGAGCTCTTTTGTCATTATGCCTTTCGAAAAAGTTGTCCTGAATCAAACTATAAAGATCTGTCCAATCGAGCAATGAGTTGTTGCAAAGGCCTTCCATTGGCCTTAGAAGTACTAGGCTCTCATTTGTTTAAAAAAAATGTGGATGTATGGAAGGACGCATTGGATAGATATGAAAAAAGTCCACATGGAAATGTTCAAAAAGTTCTTAGAATAAGCTATGATAGCCTGTTCCGCCATGAAAAGTCTATTTTTCTTGATGTTGCATGTTTTTTCAAAGGGCAACGATTGGATTATGTAAAAACTGTACTAGATGCATCTGATTTCAGCTCAGGAGATGGTATTACAACATTAGTTAATAAATCACTTTTAACTGTTGACTATGATTGCCTGTGGATGCATGATCTAATACAAGACATGGGTAGAGAGATAGTTAAGGAGAAAGCAAACAATAAAATTGGCGAACGCAGCAGATTATGGCACCATGAAGATGTTCTTCAAGTATTAGAAGATGATAATGGAAGTAGCGAAATTGAAGGAATAATGCTCGACCCCCCTCATAGAAAAGAAATTAATTGTATTGATACTGTATTTGAGAAGATGAAGAATCTTCGAATTCTTATCGTTCGTAACACAAGCTTTTCACATGAGCCTCGTTATCTCCCAAAAAACTTAAGGCTACTTGATTGGAAGAACTACCCTTCAAAGTCTTTGCCATCAGAATTTAATCCCACTAAAATCAGGGCCTTCAATGGAAGTCCTCAACTCTTACTGGAAAAGCCATTTCAGTTTGACCATTTGACTTACATGAATATCTCCGGTTGTGATAAGGTTTCTGAATTTCCTGATGTGTCTAGAGCCATGAATTTAAGAAAATTGATACTTGATGGATGCGAGAACCTGGTTAGCATTCATAAATCAGTTGGACATCTCGCTAACCTTGTTTCTCTTAGTGCTTCAAATTGCACACAACTCCATAGTTTTGTGCCAACAATCTATTTGCCATCTCTTGAATCCCTTTCCTTTGTTCTTTGCGCAACACTCGCACACTTTCCAGATATCGAAGGAAAGATGGATAAGCCATTAGAGATTGTTATGTCATATACAGCTATTCAGAAGCTTCCAGATTCCATCAAGGAACTTAATGGCCTTACCTATCTTGAGATGACAGGTTGTGAGGAACTCCGATATTTACCAAGTAGCTTATTTAAGTTGCCAAATTTGGTCACATTAAAACTTGCAGAATGTGCTTTCCTTCCAAGGTCATTGAGAATGTTTATAGGAAGTCCTTCAACGTGCGCAAAACTAGAGACATTACATTTCGACAATACTGGGCTGACAGACTATGATCTTAAGACTATTGTTGCCATTTTTCCTAACTTGAAAGACTTGAATGTATCGCGGAACAGATTTTCTGATCTCACATTGAGCATTGGGAAATTTACTAACTTGACAAGTCTTGACGTGAGTTATTGTACGGACCTTAAAGGAATGCCTTCAATACTGCCATCAAGTGTTCAGAAAGTAGATGCAAGAGAATGTCGATCCTTAAATCAATTTTCATCAAACGCCTTATGGATTCAGGTAAAAAAAGAAAAGAATGAATTAGAAGTCATGATGCCAAAAAGGGAGATTCCAAAATGGTTCCACTATGTTAACAAGGGACGGTTTCCGGATTTCAAGGCTCGTGGGAAGTTCCCTGCGGTTGCTATAGCGTTTGTATTTGGGGAAGTGAATGCCATTGACAAAGCTAATAGAAGTATAAATGTTGGCATTCACTTGTTGATTGAGGATGAAAGGAGAAAGTTTCGTAATGTCCCTGTCCCTGAGAATCATGTGTTCTTGTGTGACCTACGAGGTTTGTTCAGTTTGGAAGAATGGGAGGATGTAGGTGTTGGAGTTGGTAATGATTGGAAGACCATACAGGTTTACTGTGACACAAAGTTGCCTCTATGTTCATGGGGAGTTTATGTGTACAAGAGTGAAAGTAACATGAAATATATCCAATTCCCGTCTAATGATCCCTGTTCCTCCTTCTAA	3102	0.3823	MENHGAVSETKCTFDVFLSFRGEDTRHTFTCKLYDALWLKGIDTFMDNKELKNGDKIGPTLHKAIEEARISVVVLSENYADSSWCLDELVKIHECMESKNQLVWPIFYKVNPSDVRHQKGSYGVAMTKHETSNGIDLEKVHKWRSTLNEIANLKGKYLEEGRDESKFIDDLATDIFKIVSSKDLSREMFIVGREYRVKELKLLLDLESRDITCLLGIHGTGGIGKTTLAKALYDSIYKQFDGTSFLNVGETSNPKTDLKHLQEKLLSEILEDDKIHWRNIEEGTAKIERRLGFKRVLIVLDNVDDIKQLNNLAGKCAWFGPGSRIIITTRDKHLLDLGEVEKRYEVKMLDEKESLELFCHYAFRKSCPESNYKDLSNRAMSCCKGLPLALEVLGSHLFKKNVDVWKDALDRYEKSPHGNVQKVLRISYDSLFRHEKSIFLDVACFFKGQRLDYVKTVLDASDFSSGDGITTLVNKSLLTVDYDCLWMHDLIQDMGREIVKEKANNKIGERSRLWHHEDVLQVLEDDNGSSEIEGIMLDPPHRKEINCIDTVFEKMKNLRILIVRNTSFSHEPRYLPKNLRLLDWKNYPSKSLPSEFNPTKIRAFNGSPQLLLEKPFQFDHLTYMNISGCDKVSEFPDVSRAMNLRKLILDGCENLVSIHKSVGHLANLVSLSASNCTQLHSFVPTIYLPSLESLSFVLCATLAHFPDIEGKMDKPLEIVMSYTAIQKLPDSIKELNGLTYLEMTGCEELRYLPSSLFKLPNLVTLKLAECAFLPRSLRMFIGSPSTCAKLETLHFDNTGLTDYDLKTIVAIFPNLKDLNVSRNRFSDLTLSIGKFTNLTSLDVSYCTDLKGMPSILPSSVQKVDARECRSLNQFSSNALWIQVKKEKNELEVMMPKREIPKWFHYVNKGRFPDFKARGKFPAVAIAFVFGEVNAIDKANRSINVGIHLLIEDERRKFRNVPVPENHVFLCDLRGLFSLEEWEDVGVGVGNDWKTIQVYCDTKLPLCSWGVYVYKSESNMKYIQFPSNDPCSSF*	1034

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso20g0466	1033	Pfam	TIR domain	14	185	IPR000157	GO:0007165
	Gso20g0466	1033	Gene3D	-	177	341	IPR027417	-
	Gso20g0466	1033	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	155	IPR035897	-
	Gso20g0466	1033	SMART	till_3	13	153	IPR000157	GO:0007165
	Gso20g0466	1033	Gene3D	-	348	431	IPR042197	-
	Gso20g0466	1033	Gene3D	Ribonuclease Inhibitor	707	889	IPR032675	-
	Gso20g0466	1033	Gene3D	Ribonuclease Inhibitor	536	706	IPR032675	-
	Gso20g0466	1033	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	19	1011	IPR044974	GO:0006952
	Gso20g0466	1033	ProSiteProfiles	TIR domain profile.	12	179	IPR000157	GO:0007165
	Gso20g0466	1033	SUPERFAMILY	"Winged helix" DNA-binding domain	419	524	IPR036390	-
	Gso20g0466	1033	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	19	1011	-	-
	Gso20g0466	1033	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	186	441	IPR027417	-
	Gso20g0466	1033	Pfam	NB-ARC domain	194	433	IPR002182	GO:0043531
	Gso20g0466	1033	PRINTS	Disease resistance protein signature	214	229	-	-
	Gso20g0466	1033	PRINTS	Disease resistance protein signature	290	304	-	-
	Gso20g0466	1033	PRINTS	Disease resistance protein signature	383	397	-	-
	Gso20g0466	1033	PRINTS	Disease resistance protein signature	833	849	-	-
	Gso20g0466	1033	Gene3D	-	11	176	IPR035897	-
	Gso20g0466	1033	SUPERFAMILY	L domain-like	535	872	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso20g0466	Gso-Chr20	21012689	21017911	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso20g0466	14	802	WRKY Transcription Factor Family	AT4G12020	31.196	2.46e-94	328

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso20g0466	-		-	gsj:114401341	2092