Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0461 ATGGGTTATATATGTGATTTTTGTGGAGACCAGAGATCCATGGTGTACTGCCGCTCTGACGCTGCATGCTTATGTTTGTCTTGTGATCGGAATGTTCATTCTGCTAATGCCCTTTCTAAGCGTCATTCACGCACCCTTTTATGCGAGAGATGCAATTCACAACCTGCCTTTGTAAGGTGTGTTGAAGAGAAGATTTCACTTTGTCAGAATTGCGACTGGTTGGGTCATGGCACCTCTACATCTTCTTCAACACATAAGAGACAAGCAATCAATTGCTACTCTGGCTGCCCTTCAGCGGCAGAACTGTCTTCGATATGGTCATTTGTGTTAGAAATCGCTGCCATAAGTGAGTCTACATGTGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAAGTGTGCTGGTGTTCCTCCGGAAGACCAGAATGTGTCTGGTTCAGATGAAGTTACCGATCTACCTGCTTTGAACAAGTCTTTGGTTGGTGCATCTTTGATGCCTGAATCAAGCTCCGAACCTTGTATTCTGGACCAGCCAGCTGGACCTACCAATGAATGTCTGCCAAAGTTATACTGTCCTGCTACAAAATGCCCTGCCTTATCTGAAGATGATAATCTGTATGATGATTTCAACATGGATGAAGTGGATCTAGATCTTGAGAATTATGAAGAACTTTTTGGTATGGCCCTCAGTCATTCTGAGGAGCTTTTTGAAAATGGTGGAATTGATAGCTTGTTTGGGACAAAAGGCATGTCTGCTGGAGATTCCAATTGTCAGGAAGCTATTGCTGCTGAGGGGTCGTCGGTTGGACAGGTCAATGCAATGCAACCAGCTTGCAGCAATGCAGCGTCTGCAGATTCCATTTTGAGTACTAAAACTGAACCAATTCTTTGTTTTACTGGAAGGCAAACTCAATCAAACCTTTCTTTTTCTGGTGTTACTGGAGAGAGTAGTGCTGGAGACTATCAAGACTGTGGGGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTTGCTCCTTGTCCGGAGAATTCCCTACAATCCGCCAACCGTAGTAATGCTGTCATGCGGTACAAGGAAAAGAAGAAGACACGGATGTTTGACAAAAAAGTTAGGTATGCCTCTCGCAAGGCAAGGGCTGATGTCAGAAGGCGTGTGAAAGGGCGGTTTGTCAAAGCCGGTGACGTCTATGATTATGACCCTTTGAGCACAACCAGAAGCTGCTGA 1230 0.4472 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLEIAAISESTCEQELGLMSINENKCAGVPPEDQNVSGSDEVTDLPALNKSLVGASLMPESSSEPCILDQPAGPTNECLPKLYCPATKCPALSEDDNLYDDFNMDEVDLDLENYEELFGMALSHSEELFENGGIDSLFGTKGMSAGDSNCQEAIAAEGSSVGQVNAMQPACSNAASADSILSTKTEPILCFTGRQTQSNLSFSGVTGESSAGDYQDCGASSMLLMGEPPWFAPCPENSLQSANRSNAVMRYKEKKKTRMFDKKVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSTTRSC* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0461 409 CDD Bbox1_BBX-like 4 47 - -
Gso20g0461 409 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515
Gso20g0461 409 Pfam CCT motif 352 394 IPR010402 GO:0005515
Gso20g0461 409 SMART bboxneu5 48 90 IPR000315 GO:0008270
Gso20g0461 409 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gso20g0461 409 CDD Bbox1_BBX-like 47 90 - -
Gso20g0461 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 408 - -
Gso20g0461 409 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Gso20g0461 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 408 - -
Gso20g0461 409 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0461 Gso-Chr20 20542044 20550434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0461 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 57.007 9.03e-157 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso20g0461 CCT 3.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0461 - - gmx:100796748 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0461 20 20542044 20550434 Gso13g0084 13 2774532 2781054 GST