Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0446 ATGCTACCTCTGCGTCCACAAGCACAAGTTGGAGGACTACAAACATCGCTGTCTCTGGTTTCCTCAGACCCTCTCCTGTCTCCTGATGAACCTAGATCAAACTCCAACAATCTCCATGAATCTCCGGCTGAAAGTGCAAGTTCTCAGGAAACTTGGCCTACTGCTGATGCAGCTGCAGCAAAGAAGATGGAGAATGGAAAAGCGGAGGTTAATTGCCTTGAGCAGAAAGTGATTCATCGTGTTTCTAGTTCAGACAAAGTTACTCTTCAGGATGTTGCTAGAGAAAGTGTTTGTATGATATGTGAAAAAATGCATCATCTACCTGAGGAATATCTAGAAGAGCTAAAGAATGGACTGCGAAGTATCCTTGAGGGAGGGAATGGTTCGCAGCACAGAGAGGATTTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGAACTGATTTGACTGCCAAGACACTGGTCAGAGCACACCGAGTGCAGCTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAGTCTATCACAGACTTCCCTGATTGAGATCTTTGGCTATAAGAGATGCAGAAACATAGCGTGCCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGAGATATGCACCAACACTAATGGTTTCTGCAATCTTTGCATGTGCGTGATCTGCAACAAGTTTGACTTTGAGGTGAATACTTGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCGTTCGTGAGCAACTTATTTGCATGGGCCCTTCTTCAAAGAGTGGAGCAGGACTGAGTGAAATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAATTGTTGGGTTGGGTTAAAGATGTCTTCCAGCACTGTGCACCGTCATGGGATGGAGAAGCCTTAATGAGGGAACTTGATTATGTTAGTAGGATCTTTCATGGGAGTAAAGACCCCCGAGGAAGGAAGCTATTTTGGAAGTGTGATGATCTTAAGGAAAAATTTAAAAGTAAAAAAATGGATTCAAAAGCTGTCTGCAGGGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGACTCTGCAAAATGCCTGGAAAATGGAGAAAGTGGAACGTTGATTGCTCCGCAGGACGCATGCAATAGAATTGCTGAAGTGGTGCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGGATGTTCAAGAAGGCTCGCTTGGCTCTTGAAGCTTGTGAACATGAACTAGCTGACAAGGCCAGGGAGGTGACAGAGCTCAAGATGGAGAGACAGAAAAAGAAGCTGCAGATAGAAGAGCTGGAGAAAATTGTGAGGCTGAAAAATGCAGAGGCTGATATGTTCCAATTGAAGGCTAATGAGGCTAAACGAGAGGCCGAGAGGCTTCAGAGGATTGCTCTTGCCAAGCAAGATAAATCAGAAGAAGAATTTACTAGCAACTACTTGAAACAACGTTTAAACGAGGCCGAGGCCGAGAAGCAGTATCTTTATGAGAAGATCAAATTGCAAGAGAGTTCTCGCGCTTCGCAGAGCAGTAGTGGTGGTGACCCTTCTCAGATGCTGATCTATTCCAAAATCCACGATCTACTTTACAGTGTTCCTTCCAAAGCAGACAGTCAGGGTAATGAGCGCCACCCTTTTCGGACAAATCCCTGA 1704 0.4437 MLPLRPQAQVGGLQTSLSLVSSDPLLSPDEPRSNSNNLHESPAESASSQETWPTADAAAAKKMENGKAEVNCLEQKVIHRVSSSDKVTLQDVARESVCMICEKMHHLPEEYLEELKNGLRSILEGGNGSQHREDFFILQKLVQSRTDLTAKTLVRAHRVQLEILVAINTGIQGFLHPSISLSQTSLIEIFGYKRCRNIACQNQLPADDCTCEICTNTNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAVREQLICMGPSSKSGAGLSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDYVSRIFHGSKDPRGRKLFWKCDDLKEKFKSKKMDSKAVCRAILMFFQELEVDSAKCLENGESGTLIAPQDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALEACEHELADKAREVTELKMERQKKKLQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRIALAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYEKIKLQESSRASQSSSGGDPSQMLIYSKIHDLLYSVPSKADSQGNERHPFRTNP* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0446 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Gso20g0446 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Gso20g0446 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Gso20g0446 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Gso20g0446 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Gso20g0446 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Gso20g0446 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Gso20g0446 567 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Gso20g0446 567 PIRSF UCP025218 3 554 IPR004082 -
Gso20g0446 567 MobiDBLite consensus disorder prediction 9 54 - -
Gso20g0446 567 Coils Coil 412 488 - -
Gso20g0446 567 PANTHER PROTEIN OBERON 2 1 555 - -
Gso20g0446 567 MobiDBLite consensus disorder prediction 1 63 - -
Gso20g0446 567 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Gso20g0446 567 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 555 IPR004082 -
Gso20g0446 567 SMART PHD_3 225 285 IPR001965 -
Gso20g0446 567 Pfam Coiled-coil region of Oberon 413 546 IPR032535 -
Gso20g0446 567 CDD PHD_OBE1_like 225 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0446 Gso-Chr20 19575238 19578578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0446 195 297 PHD Gene Family AT5G57380 31.731 3.51e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0446 - - gmx:100781890 1098.19