Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0438 ATGTTTTATGCTACTTCTATATTCTTATTTCCATTGGTCTCACTGCAAAAGGATGTTGATTTTGAATCTCCGAAAGCTAAAAAACAAGTTCGTGGTTCTACATCTACGAAAATATCTCATGCCGCAGAAGTCCATAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAGAAGATGAAAGCTTTGCAAGAACTTATACCTCCGTGCAGCAAGTCTGGCAAAGCTTTAATGCTGGATGAACCAATTGAGTACTTGAAGTCACTGCAATTACAAGTGTAG 282 0.3865 MFYATSIFLFPLVSLQKDVDFESPKAKKQVRGSTSTKISHAAEVHNLSERRRRDRINEKMKALQELIPPCSKSGKALMLDEPIEYLKSLQLQV* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0438 93 Pfam Helix-loop-helix DNA-binding domain 44 90 IPR011598 GO:0046983
Gso20g0438 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 89 IPR011598 GO:0046983
Gso20g0438 93 CDD bHLH_AtPIF_like 41 93 - -
Gso20g0438 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 93 IPR036638 GO:0046983
Gso20g0438 93 Coils Coil 46 66 - -
Gso20g0438 93 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 17 93 - -
Gso20g0438 93 SMART finulus 46 93 IPR011598 GO:0046983
Gso20g0438 93 Gene3D - 35 93 IPR036638 GO:0046983
Gso20g0438 93 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 17 93 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0438 Gso-Chr20 17211742 17212517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0438 28 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 77.612 2.46e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso20g0438 HLH 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0438 - - gsj:114402626 183.341