Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g0412 ATGGCTTTTTGGGGAGTCGAAGTAAAACCGGGAAAGCCTTTTTCTCATAAACATGACCCCTCCAAAGGACGCCTCCATATTTCGATGGGCACTTTGGGGTTGGGCACTGCAATAGCAAAAAGCACTCTGCAGTGCAATGTGGGAAACAGGAGCCCTGTGTACCTGTGCTCTCTCTATCCCGGAAAAACCGAGTCGTTGCAGTTAAATTTAGAGCTCGAGGAAGTTGATGAAACTGTTGTTTTCTCTGTAATTGGTCCTCGGAGCATTCATCTCTGCGGTTACTATCTCGTCACTGCCCGCAACTCCAATCTCGTTGATGATTCGGAGTCATTTGGGGAGGACATTGCAGATACAGAAACAGAGAAATCTGATTACAGTGAAGATGAGTATGATGATAGTTTTATTGATGATGACGGTGTTCCAGAGGCTTTCCTACCATCTCCTATTTCTGAAGAAGAGGAAGCTTCTCATGATAGCAGAGAAAAAGGTAGGAAAGGCAGCCTTAGACGGCTGAGGAAAAAGTACCAGTCAGTAGAGTCTGATGATGATAGCCGTCACGAAGAAAAGATAATTGCTGATGACAGTATGGATGACCAAACCCAGGAAATCAAAGATGATGAAGATATCCTACCTATTTCATCTCTTTACAAGAATAAAGCCTCTCAAAGGGTCTTGGACGAGGAAATGGATGCTAGTGTTGACAGACAGGCAGGTGATGCCAGCAACAAGAATGGTGAAGATGGTGGAAATAGTATTGTTGAAACAAATTTAAAAGCTGACCATGACCTTGTAGATAGTCAGACGCTCAGGGAAGCTCAACCCTCAAACCACTTGGTAGATCCTTGCATTGTTCTGGATGTTGGGGATATTAAAAATTTAAAAAAGAAAAAGAAGAGAAAGGGAAAAGAGATTGATAGCTCCAGTAATGATCATTCTATCAAACTAGATAGTGGTATAGGAGGTGAGCCAAAAATGGAAAAGATGACCCAGGATTTTGTGGCAGGAAACAAACAACAGCAGCATGATGATGATAACAGGGATGCCAATATTTCAGGCAATGTTGCATTGCCTTCTGCTGACACAGGTCCTAAAAAAAATAGAACAAAGAAGAAAAAGAAAGAACAGGTAAACAAAAGTGACAACGGATATCAAGAAGGTATCATCCAAGAGGACAAAGCCAAAAGAGATGCAGCAGAGTCCCAGAATCTGATCCATAAAGTTTTTGCAGAAAAAGAACTGCATGAGAATCTAACTAATGAGAAGAGTGTGGACAATGGTGCTCATGAGTCTCCTGATGGAAATCTATCTGATGATAGAAAAGTTAAGAAAAGGAAGAAAATGAGTAAGAGTCCGGGCAATGGGGAAGTTGCAAATTCTGATATGCCTGTATCTGTTGAGCAAAGTGGTGAAACTGAGATGATGGAGGAAGACAGAAATAAGAGGGAAGATGCAAAGCCTTCCCAAGTTAGAACATTGGCAAATGGACTAGTTATTCAAGAACTAGAAAAGGGGAGGCAAGATGGAAAAATAGCTGCTTTGGGGAAAAAGATCAGCATCTATTACACCGGCAAGATGAAGGAAGATGGAGTAGTATTTGCATCAAATGCTGGCCAAGCTCCTTACAAATTTCGCCTTGGCAAAGGAAAAGTTATTGAGGGTTGGGATGTTGGCCTTGAAGGCATGCAAGTTGGAGAGAAGAGAAGACTTGTAATTCCACCATCATTGACGTCTGAGAGTGATGAACATTGTGCCAAGATACCACCAAATTCATGGTTGGTTTATGACTTTGAACTGGTTAAAGTTCATTGA 1809 0.4174 MAFWGVEVKPGKPFSHKHDPSKGRLHISMGTLGLGTAIAKSTLQCNVGNRSPVYLCSLYPGKTESLQLNLELEEVDETVVFSVIGPRSIHLCGYYLVTARNSNLVDDSESFGEDIADTETEKSDYSEDEYDDSFIDDDGVPEAFLPSPISEEEEASHDSREKGRKGSLRRLRKKYQSVESDDDSRHEEKIIADDSMDDQTQEIKDDEDILPISSLYKNKASQRVLDEEMDASVDRQAGDASNKNGEDGGNSIVETNLKADHDLVDSQTLREAQPSNHLVDPCIVLDVGDIKNLKKKKKRKGKEIDSSSNDHSIKLDSGIGGEPKMEKMTQDFVAGNKQQQHDDDNRDANISGNVALPSADTGPKKNRTKKKKKEQVNKSDNGYQEGIIQEDKAKRDAAESQNLIHKVFAEKELHENLTNEKSVDNGAHESPDGNLSDDRKVKKRKKMSKSPGNGEVANSDMPVSVEQSGETEMMEEDRNKREDAKPSQVRTLANGLVIQELEKGRQDGKIAALGKKISIYYTGKMKEDGVVFASNAGQAPYKFRLGKGKVIEGWDVGLEGMQVGEKRRLVIPPSLTSESDEHCAKIPPNSWLVYDFELVKVH* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g0412 602 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 1 263 - -
Gso20g0412 602 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 347 602 - -
Gso20g0412 602 SUPERFAMILY FKBP-like 467 601 - -
Gso20g0412 602 MobiDBLite consensus disorder prediction 116 206 - -
Gso20g0412 602 MobiDBLite consensus disorder prediction 415 488 - -
Gso20g0412 602 MobiDBLite consensus disorder prediction 172 198 - -
Gso20g0412 602 MobiDBLite consensus disorder prediction 221 254 - -
Gso20g0412 602 MobiDBLite consensus disorder prediction 373 399 - -
Gso20g0412 602 Coils Coil 290 310 - -
Gso20g0412 602 MobiDBLite consensus disorder prediction 116 138 - -
Gso20g0412 602 Pfam Nucleoplasmin-like domain 3 96 IPR041232 -
Gso20g0412 602 MobiDBLite consensus disorder prediction 151 165 - -
Gso20g0412 602 Gene3D Nucleoplasmin core domain 1 100 - -
Gso20g0412 602 MobiDBLite consensus disorder prediction 293 399 - -
Gso20g0412 602 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 511 599 IPR001179 GO:0003755
Gso20g0412 602 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 514 602 IPR001179 GO:0003755
Gso20g0412 602 MobiDBLite consensus disorder prediction 415 441 - -
Gso20g0412 602 Gene3D - 463 602 IPR046357 GO:0003755
Gso20g0412 602 MobiDBLite consensus disorder prediction 452 466 - -
Gso20g0412 602 MobiDBLite consensus disorder prediction 471 487 - -
Gso20g0412 602 MobiDBLite consensus disorder prediction 237 251 - -
Gso20g0412 602 PANTHER PEPTIDYLPROLYL ISOMERASE 347 602 - -
Gso20g0412 602 PANTHER PEPTIDYLPROLYL ISOMERASE 1 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g0412 Gso-Chr20 13041397 13047882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g0412 514 599 Calmodulin-binding Proteins AT5G48570 40.230 5.26e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g0412 K14826 - gmx:100798135 1112.06